BS20327.complete Sequence
674 bp assembled on 2011-01-07
GenBank Submission: KX801887
> BS20327.complete
GAAGTTATCAGTCGACATGCATCGCGAAAACGCCTACAGCAAGGAGGCCG
AGCTGAAGAATCTGGCCAAACGCGAGTTGGCCAACGGGTTGGACAAGGAT
CCAATTTACAAATTGCGCCTGCAGTGCTTCAGTCGCGGTGCCACCGGCAT
CTTGGGCCTGTCCAGATCATTCCGGGTGATGGACGACGATGGCAGCAAAT
CTCTCAGTCCCGAGGAGTTCAAAAAAGGAGTCACGGATATCGGCCTGGAC
CTGACTGATTCCGAAATCGATGAAATGTTCTCCAGATTCGACACAGATGG
AAGTGGCAATATTAATATGACAGAATTCCTAGTAAAGCTGCGTCCTCCTA
TGAATAATTCGCGTATCAGTATCATCGAAAAGGCCTTCGATAAGATGGAT
GCCAATGGCGATGGCCAAATTACTGTCACCGATTTGAAGAATGTATATTC
GGTGCGCGATCATCCGAAATACTTAAGTGGCGAGATGACGGAAAACCAGA
TATTCACGCAGTTCCTGAAAAACTTCGAGGTGGGTGCTCCAAATCCGGAT
GGCATCGTAACCAGGGAGGAATTTATCAACTACTATGCCACGATCAGCGC
CTCGATCGATAACGACGCTTATTTTGATCTTATGATGAGACAAGCCTACA
AACTCTAGAAGCTTTCTAGACCAT
BS20327.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31345-RA | 642 | CG31345-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
| CG10126-RB | 684 | CG10126-PB | 117..247 | 91..221 | 190 | 76.3 | Plus |
| CG10126-RA | 648 | CG10126-PA | 81..211 | 91..221 | 190 | 76.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31345-RA | 984 | CG31345-RA | 143..785 | 17..659 | 3215 | 100 | Plus |
| CG10126-RB | 835 | CG10126-RB | 146..276 | 91..221 | 190 | 76.3 | Plus |
| CG10126-RA | 907 | CG10126-RA | 218..348 | 91..221 | 190 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12811344..12811659 | 659..344 | 1580 | 100 | Minus |
| 3R | 32079331 | 3R | 12813773..12813921 | 165..17 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 12811950..12812074 | 285..161 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 12811720..12811781 | 343..282 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:31:00 has no hits.
BS20327.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:00 Download gff for
BS20327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31345-RA | 143..784 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:56 Download gff for
BS20327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31345-RA | 143..784 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:07 Download gff for
BS20327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31345-RA | 143..784 | 17..658 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:07 Download gff for
BS20327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12811345..12811659 | 344..658 | 100 | <- | Minus |
| 3R | 12811720..12811777 | 286..343 | 100 | <- | Minus |
| 3R | 12811950..12812069 | 166..285 | 100 | <- | Minus |
| 3R | 12813773..12813921 | 17..165 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:56 Download gff for
BS20327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8637067..8637381 | 344..658 | 100 | <- | Minus |
| arm_3R | 8637442..8637499 | 286..343 | 100 | <- | Minus |
| arm_3R | 8637672..8637791 | 166..285 | 100 | <- | Minus |
| arm_3R | 8639495..8639643 | 17..165 | 100 | | Minus |
BS20327.pep Sequence
Translation from 16 to 657
> BS20327.pep
MHRENAYSKEAELKNLAKRELANGLDKDPIYKLRLQCFSRGATGILGLSR
SFRVMDDDGSKSLSPEEFKKGVTDIGLDLTDSEIDEMFSRFDTDGSGNIN
MTEFLVKLRPPMNNSRISIIEKAFDKMDANGDGQITVTDLKNVYSVRDHP
KYLSGEMTENQIFTQFLKNFEVGAPNPDGIVTREEFINYYATISASIDND
AYFDLMMRQAYKL*
BS20327.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31345-PA | 213 | CG31345-PA | 1..213 | 1..213 | 1097 | 100 | Plus |
| CG10126-PA | 215 | CG10126-PA | 9..213 | 7..211 | 713 | 66.3 | Plus |
| CG10126-PB | 227 | CG10126-PB | 21..225 | 7..211 | 713 | 66.3 | Plus |
| CG11165-PA | 148 | CG11165-PA | 15..143 | 51..188 | 140 | 25.2 | Plus |
