BS20329.complete Sequence
1112 bp assembled on 2011-01-07
GenBank Submission: KX800522
> BS20329.complete
GAAGTTATCAGTCGACATGGCGCCCGTTTCAAAACGCCGTTTACCGAAAA
AATCGAATACAAATGTAAAAGTAACGAGCACACTTTCGAAAATTATAATG
CAAGGAACTGAACAGTTGTTGGACTCGGGAAATAATACAAATATTCATGT
TATTGAAAAACCCCGAATGGTGCGGTATTCAAATTCATCGCTTTACAGTG
CGTTAGCCGAGGGCCATTCCACACCGGAAATAAATATTGTGGCAAGTAAT
AGCAACGCACATGGCAAGGTAGAGCTTAATTCTGAAATCAGCGATATGTC
TATTGCATCAGTGTCGGTGAGAAATAAACCGTTTGTGAACTTTCTCCAGG
ATTTCTCCATAGCTCATGGTTCCGTACCCCGAGAAAGTATTCAGCAGGCC
ATCGTCGAGTGGGATAAACTGACAGCTGAGCAAAAACAAGAATATACTCC
TGAAAACTACGTTCTAAAATTATGTGATCAAGTGCATAATCGTGACGAAA
TTTTAAATGCAGCTACACTGCATCCGGTATATCCAATTACAACCAAAATA
CAGAATGCATTTAATGAAGCCAGTACGTCCATGAAATCTGAAAAGTATGC
GAAGAAGATCTCGTCCCCAAAAATACGTAAGACAATTAAGCGTTTAAAAC
CAAAACCACGAGTTCTGGTGACTCCCAGAAAATCAGCCAAAAATGCTGGC
AAAAAGAATATAATTTATAGTGGTTCGGCTTACAAAAACTTTCTGCGAAA
AACCGGTCAAGCCAATCCCGGTCTGATGATTGTGGAAAAGGCCTCATTAT
GGCGTAAAATGACTCCTGCCGAAAGGGATCTCTATCGGAATGTGAGCAGA
CCAAGGCGCCAGAACACCAAAGTATCCAGAGTTGACGCTCCCAAGCGCGA
AAAGAAGCGTAAAACCTCACAGTTCACCCAGATTTCAGAAAGTGATTTTT
CGGAAACTAATTTCAATATTCAGCGAGATGGCCAGCTAGAAGTTTGGAAT
GGAAGTACAAATTCCCTAGAGGAGGCAAACGGCTCCTGGTTCAAATTTGG
ATACATTGCTAAAGCACTTGGAACAGTCAAGAGTATATTTAAATAAAAGC
TTTCTAGACCAT
BS20329.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst33A-RB | 1080 | CG6541-PB | 1..1080 | 17..1096 | 5400 | 100 | Plus |
| Mst33A-RA | 1080 | CG6541-PA | 1..1080 | 17..1096 | 5400 | 100 | Plus |
| Mst33A-RC | 999 | CG6541-PC | 251..999 | 348..1096 | 3745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst33A-RB | 1328 | CG6541-RB | 158..1237 | 17..1096 | 5400 | 100 | Plus |
| Mst33A-RA | 1342 | CG6541-RA | 172..1251 | 17..1096 | 5400 | 100 | Plus |
| Mst33A-RC | 1261 | CG6541-RC | 422..1170 | 348..1096 | 3745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11585524..11586603 | 1096..17 | 5400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:31:09 has no hits.
BS20329.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:00 Download gff for
BS20329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst33A-RB | 12..1089 | 17..1094 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:59 Download gff for
BS20329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst33A-RA | 172..1249 | 17..1094 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:11 Download gff for
BS20329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst33A-RA | 172..1249 | 17..1094 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:11 Download gff for
BS20329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11585526..11586603 | 17..1094 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:59 Download gff for
BS20329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11585526..11586603 | 17..1094 | 100 | | Minus |
BS20329.pep Sequence
Translation from 16 to 1095
> BS20329.pep
MAPVSKRRLPKKSNTNVKVTSTLSKIIMQGTEQLLDSGNNTNIHVIEKPR
MVRYSNSSLYSALAEGHSTPEINIVASNSNAHGKVELNSEISDMSIASVS
VRNKPFVNFLQDFSIAHGSVPRESIQQAIVEWDKLTAEQKQEYTPENYVL
KLCDQVHNRDEILNAATLHPVYPITTKIQNAFNEASTSMKSEKYAKKISS
PKIRKTIKRLKPKPRVLVTPRKSAKNAGKKNIIYSGSAYKNFLRKTGQAN
PGLMIVEKASLWRKMTPAERDLYRNVSRPRRQNTKVSRVDAPKREKKRKT
SQFTQISESDFSETNFNIQRDGQLEVWNGSTNSLEEANGSWFKFGYIAKA
LGTVKSIFK*
BS20329.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst33A-PB | 359 | CG6541-PB | 1..359 | 1..359 | 1826 | 100 | Plus |
| Mst33A-PA | 359 | CG6541-PA | 1..359 | 1..359 | 1826 | 100 | Plus |
| Mst33A-PC | 332 | CG6541-PC | 1..332 | 1..359 | 1659 | 92.5 | Plus |
