BS20330.complete Sequence
1640 bp assembled on 2011-01-07
GenBank Submission: KX806484
> BS20330.complete
GAAGTTATCAGTCGACATGGCCATGATACCAACCACCTACAACGAAAAGG
ATAATATCTGGAGTGGAGCCAAGCGTAACTCCATCTACAACTATGACACC
TCCGTGGGCAAGATCATCTTCAACAACATGAAGAACTGGCCCAAGAATGT
GTGCCAGATATGTGATGTAGATGGAGTGACTGTCACCTTCGAGCAGGGTC
TCACCTGGTCCATCCGGATTGCGCAGTACCTTAAGAAGAGGGGTCTTAAC
CACAAGGATGTCATTGGAATTGCAGCCAAAAACTCAACCTATGTGATGCC
CCTTGGAGTGGCCTGTTTGATGAATGGCACCCCATTCCATTCGGTTAATC
CTGTGCTAGATGATGCAACCTTGACGCATGTGTTTTCGATCACAAAGCCC
ACACTGATATTTTGTGATGGACAAGAGTACGATAAAGTGCATAAGGCTAC
GGTAGGATGGCATCCGGAAATCCTTACCCTCACGGATCATGTGGAAGGAG
TCCAGGGCATCGAGACCTTGCTGGATCCCACCACTACAGAAAAGATATAT
CAACCGGAAGTGTTGAAGGAAGGAGGTGATCAAACCGTAGCCATCCTATG
CTCCTCTGGAACCACTGGTTTGCCCAAGGCCGTCTGCATTTCCAACAGCA
TTCTGATCCAAGACAGCATGTTGATCACCAGTCAGTCGGTTATCTATGTA
GGAAGCTGTCTGGACTGGATCACGGGCTTGTGGGCCTTTGTGTTCAGCAC
CGTATTCGGTTGCACCCGCATTATCAGTAACAAAGCCTTCACTCCGGAGT
ACTTTGTGGGACTGGTGAAGAAATACAAGATCAACTATGCTGTGCTGCCG
CCGCGTCATCTGTCCGCTCTGATCACCTGTCCGGATGCGAAGCCGGATGC
ACTGGCTCCCATCACGCACCTCAACTACGGCGGAGGATCGATATCGTTGG
CCACCCTGCAGCGGTCGCAGGAACTCTGCAAGACAGCCATGTTCAATTCG
GGATACGGGATGACAGAGGTGGGCGCCATCACGATCAATATCGGAATCAG
CAACGTCTCGTCCGCGGGCAGGCCTGTGCCGGGCATTAAGATTCGTATCG
TGGATGAGGATGGCAAGAGCTTGGGCTACAACCAGGTGGGAGAGATCTAT
GTGCACACGGGTCAGGCCTGGAACGGGTACTACGGCAATCCCGTGGAGAC
GCGACGCATGCAGGACTTCGAGGGTTGGTTCCATACCGGCGATCTGGGCT
ACTTCGATGAGCAGAACTTCCTGTATATAGTGGATCGGAAGAAAGAGATC
CTCAAGTACAATGGCCTTCACTATTGGCCCACAGAGATCGAAACCGTTAT
CGCGGAGCTCTCCCAGGTGCAGGATGTCTGCGTGGTGGGAATCTACGACG
AGCGGGAGGGTGACGCCGCCGGTGCACTGGTCGTCAAGAGCAAGGGCGCC
ACCATTTCGGCCAAGGAGATCGTGGAGCATGTGGCCAAGCGATTGCCCGC
CACCCAGAAGCAGCTGAGAGCCGGTGTCCAGTTCACCGACAAACTGCCCG
CCAATGTCAATGGCAAGACCATGCGAAAGACGGCACGCGACGTGTTTGTC
GCCCTGCGCGTATCTGGAAAGTGAAAGCTTTCTAGACCAT
BS20330.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8834-RA | 1608 | CG8834-PA | 1..1608 | 17..1624 | 8040 | 100 | Plus |
| CG4830-RA | 1605 | CG4830-PA | 97..335 | 113..351 | 310 | 75.3 | Plus |
| CG4830-RA | 1605 | CG4830-PA | 1465..1523 | 1481..1539 | 205 | 89.8 | Plus |
| CG11453-RA | 1620 | CG11453-PA | 1122..1275 | 1138..1291 | 200 | 75.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8834-RA | 1832 | CG8834-RA | 51..1660 | 15..1624 | 8050 | 100 | Plus |
| CG4830-RA | 1861 | CG4830-RA | 152..390 | 113..351 | 310 | 75.3 | Plus |
| CG4830-RA | 1861 | CG4830-RA | 1520..1578 | 1481..1539 | 205 | 89.8 | Plus |
| CG11453-RA | 1831 | CG11453-RA | 1218..1371 | 1138..1291 | 200 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12420647..12421601 | 1624..670 | 4775 | 100 | Minus |
| 2R | 25286936 | 2R | 12422080..12422291 | 365..154 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 12421837..12422024 | 552..365 | 940 | 100 | Minus |
| 2R | 25286936 | 2R | 12422343..12422485 | 157..15 | 715 | 100 | Minus |
| 2R | 25286936 | 2R | 12421658..12421776 | 671..553 | 595 | 100 | Minus |
| 2R | 25286936 | 2R | 12419866..12420044 | 1569..1391 | 205 | 74.3 | Minus |
| 3R | 32079331 | 3R | 12208442..12208500 | 1539..1481 | 205 | 89.8 | Minus |
| 3R | 32079331 | 3R | 19784906..19785059 | 1138..1291 | 200 | 75.3 | Plus |
| 3R | 32079331 | 3R | 12209900..12210069 | 351..182 | 190 | 74.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:31:18 has no hits.
BS20330.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:01 Download gff for
BS20330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8834-RA | 53..1659 | 17..1623 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:01 Download gff for
BS20330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8834-RA | 53..1659 | 17..1623 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:16 Download gff for
BS20330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8834-RA | 53..1659 | 17..1623 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:16 Download gff for
BS20330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12420648..12421601 | 670..1623 | 100 | <- | Minus |
| 2R | 12421660..12421776 | 553..669 | 100 | <- | Minus |
| 2R | 12421837..12422023 | 366..552 | 100 | <- | Minus |
| 2R | 12422080..12422287 | 158..365 | 100 | <- | Minus |
| 2R | 12422343..12422483 | 17..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:01 Download gff for
BS20330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8308153..8309106 | 670..1623 | 100 | <- | Minus |
| arm_2R | 8309165..8309281 | 553..669 | 100 | <- | Minus |
| arm_2R | 8309342..8309528 | 366..552 | 100 | <- | Minus |
| arm_2R | 8309585..8309792 | 158..365 | 100 | <- | Minus |
| arm_2R | 8309848..8309988 | 17..157 | 100 | | Minus |
BS20330.pep Sequence
Translation from 16 to 1623
> BS20330.pep
MAMIPTTYNEKDNIWSGAKRNSIYNYDTSVGKIIFNNMKNWPKNVCQICD
VDGVTVTFEQGLTWSIRIAQYLKKRGLNHKDVIGIAAKNSTYVMPLGVAC
LMNGTPFHSVNPVLDDATLTHVFSITKPTLIFCDGQEYDKVHKATVGWHP
EILTLTDHVEGVQGIETLLDPTTTEKIYQPEVLKEGGDQTVAILCSSGTT
GLPKAVCISNSILIQDSMLITSQSVIYVGSCLDWITGLWAFVFSTVFGCT
RIISNKAFTPEYFVGLVKKYKINYAVLPPRHLSALITCPDAKPDALAPIT
HLNYGGGSISLATLQRSQELCKTAMFNSGYGMTEVGAITINIGISNVSSA
GRPVPGIKIRIVDEDGKSLGYNQVGEIYVHTGQAWNGYYGNPVETRRMQD
FEGWFHTGDLGYFDEQNFLYIVDRKKEILKYNGLHYWPTEIETVIAELSQ
VQDVCVVGIYDEREGDAAGALVVKSKGATISAKEIVEHVAKRLPATQKQL
RAGVQFTDKLPANVNGKTMRKTARDVFVALRVSGK*
BS20330.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8834-PA | 535 | CG8834-PA | 1..535 | 1..535 | 2820 | 100 | Plus |
| CG4830-PA | 534 | CG4830-PA | 1..530 | 1..530 | 1681 | 56.4 | Plus |
| CG11453-PA | 539 | CG11453-PA | 6..525 | 6..525 | 1327 | 47.3 | Plus |
| CG4563-PA | 537 | CG4563-PA | 5..529 | 2..527 | 1257 | 46.5 | Plus |
| CG11407-PA | 538 | CG11407-PA | 5..538 | 5..535 | 1059 | 39.6 | Plus |
