Clone BS20332 Report

Search the DGRC for BS20332

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:203
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptSfp33A1-RA
Protein status:BS20332.pep: gold
Sequenced Size:314

Clone Sequence Records

BS20332.complete Sequence

314 bp assembled on 2011-01-07

GenBank Submission: KX805915

> BS20332.complete
GAAGTTATCAGTCGACATGAAGTTCTTCATTTTGATTTCATTCTTACTGG
TCTGTCAAGGGTCCAACGAAGAGGAGGATAACATAATAGCCGAGTTGTGC
TTCAATCCGAATTCTGGACCTCCTTGCCAGAAATTAAAAACATATTATTG
GGATAAGGAAAAGAATCGATGCGTGCTCTCTCGGTATTTAATGCAGCCTT
GTGGTTTCTTTGACACAATAGACATGTGCGATAAAATATGCACCAAGGAA
TCGTGGACAATATCTCATTTGGAAGTATATGTTCGAAATATGCCTTAAAA
GCTTTCTAGACCAT

BS20332.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp33A1-RA 282 CG42472-PA 1..282 17..298 1410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp33A1-RA 359 CG42472-RA 20..307 13..300 1425 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11754137..11754345 300..92 1045 100 Minus
2L 23513712 2L 11754404..11754483 92..13 385 98.8 Minus
Blast to na_te.dros performed on 2014-11-26 15:31:33 has no hits.

BS20332.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:02 Download gff for BS20332.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp33A1-RA 24..303 17..296 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:06 Download gff for BS20332.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp33A1-RA 24..303 17..296 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:20 Download gff for BS20332.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp33A1-RA 24..303 17..296 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:20 Download gff for BS20332.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11754141..11754344 93..296 100 <- Minus
2L 11754404..11754479 17..92 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:06 Download gff for BS20332.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11754404..11754479 17..92 100   Minus
arm_2L 11754141..11754344 93..296 100 <- Minus

BS20332.pep Sequence

Translation from 16 to 297

> BS20332.pep
MKFFILISFLLVCQGSNEEEDNIIAELCFNPNSGPPCQKLKTYYWDKEKN
RCVLSRYLMQPCGFFDTIDMCDKICTKESWTISHLEVYVRNMP*

BS20332.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp33A1-PA 93 CG42472-PA 1..93 1..93 520 100 Plus