Clone BS20335 Report

Search the DGRC for BS20335

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:203
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptMf-RA
Protein status:BS20335.pep: full length peptide match
Sequenced Size:506

Clone Sequence Records

BS20335.complete Sequence

506 bp assembled on 2011-01-07

GenBank Submission: KX801781

> BS20335.complete
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACATACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAAAGAAGGCCTGGAATGATCATCTGAAGCGCATGC
AGGAGATCGAGCGCAGGTACCCATCTCGCTATGGTCTCTACTTGAGGGAC
AAGCCACTCACGCCCAACTCGCTGGTGCCCCTGGAGTACGAGCCAGAGGA
CAAGCTGCTGGCTGAGCTCAACAAGGCTATAAGAGTTTGAAAGCTTTCTA
GACCAT

BS20335.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-RN 474 CG6803-PN 1..474 17..490 2355 99.8 Plus
Mf-RG 474 CG6803-PG 1..474 17..490 2355 99.8 Plus
Mf-RA 474 CG6803-PA 1..474 17..490 2355 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-RN 814 CG6803-RN 116..591 17..492 2365 99.8 Plus
Mf-RG 879 CG6803-RG 181..656 17..492 2365 99.8 Plus
Mf-RA 813 CG6803-RA 115..590 17..492 2365 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15178280..15178490 317..107 1040 99.5 Minus
3R 32079331 3R 15176184..15176295 476..365 560 100 Minus
3R 32079331 3R 15179038..15179129 108..17 460 100 Minus
3R 32079331 3R 15176362..15176412 368..318 255 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:30:33 has no hits.

BS20335.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:58 Download gff for BS20335.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RG 186..653 22..489 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:48 Download gff for BS20335.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RA 120..587 22..489 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:57 Download gff for BS20335.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RA 120..587 22..489 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:57 Download gff for BS20335.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15176184..15176293 367..476 100 <- Minus
3R 15176364..15176412 318..366 100 <- Minus
3R 15178280..15178489 108..317 99 <- Minus
3R 15179039..15179124 22..107 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:48 Download gff for BS20335.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11001906..11002015 367..476 100 <- Minus
arm_3R 11002086..11002134 318..366 100 <- Minus
arm_3R 11004002..11004211 108..317 99 <- Minus
arm_3R 11004761..11004846 22..107 100   Minus

BS20335.pep Sequence

Translation from 16 to 489

> BS20335.pep
MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDIRAHEAPRASRPYSSY
LDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDHHYSRT
KKAWNDHLKRMQEIERRYPSRYGLYLRDKPLTPNSLVPLEYEPEDKLLAE
LNKAIRV*

BS20335.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-PN 157 CG6803-PN 1..157 1..157 835 100 Plus
Mf-PG 157 CG6803-PG 1..157 1..157 835 100 Plus
Mf-PA 157 CG6803-PA 1..157 1..157 835 100 Plus
Mf-PE 166 CG6803-PE 1..163 1..156 802 94.5 Plus
Mf-PQ 168 CG6803-PQ 1..160 1..153 796 95 Plus