BS20335.complete Sequence
506 bp assembled on 2011-01-07
GenBank Submission: KX801781
> BS20335.complete
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACATACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAAAGAAGGCCTGGAATGATCATCTGAAGCGCATGC
AGGAGATCGAGCGCAGGTACCCATCTCGCTATGGTCTCTACTTGAGGGAC
AAGCCACTCACGCCCAACTCGCTGGTGCCCCTGGAGTACGAGCCAGAGGA
CAAGCTGCTGGCTGAGCTCAACAAGGCTATAAGAGTTTGAAAGCTTTCTA
GACCAT
BS20335.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:30:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RN | 474 | CG6803-PN | 1..474 | 17..490 | 2355 | 99.8 | Plus |
Mf-RG | 474 | CG6803-PG | 1..474 | 17..490 | 2355 | 99.8 | Plus |
Mf-RA | 474 | CG6803-PA | 1..474 | 17..490 | 2355 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RN | 814 | CG6803-RN | 116..591 | 17..492 | 2365 | 99.8 | Plus |
Mf-RG | 879 | CG6803-RG | 181..656 | 17..492 | 2365 | 99.8 | Plus |
Mf-RA | 813 | CG6803-RA | 115..590 | 17..492 | 2365 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15178280..15178490 | 317..107 | 1040 | 99.5 | Minus |
3R | 32079331 | 3R | 15176184..15176295 | 476..365 | 560 | 100 | Minus |
3R | 32079331 | 3R | 15179038..15179129 | 108..17 | 460 | 100 | Minus |
3R | 32079331 | 3R | 15176362..15176412 | 368..318 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:30:33 has no hits.
BS20335.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:58 Download gff for
BS20335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RG | 186..653 | 22..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:48 Download gff for
BS20335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RA | 120..587 | 22..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:57 Download gff for
BS20335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RA | 120..587 | 22..489 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:57 Download gff for
BS20335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15176184..15176293 | 367..476 | 100 | <- | Minus |
3R | 15176364..15176412 | 318..366 | 100 | <- | Minus |
3R | 15178280..15178489 | 108..317 | 99 | <- | Minus |
3R | 15179039..15179124 | 22..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:48 Download gff for
BS20335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11001906..11002015 | 367..476 | 100 | <- | Minus |
arm_3R | 11002086..11002134 | 318..366 | 100 | <- | Minus |
arm_3R | 11004002..11004211 | 108..317 | 99 | <- | Minus |
arm_3R | 11004761..11004846 | 22..107 | 100 | | Minus |
BS20335.pep Sequence
Translation from 16 to 489
> BS20335.pep
MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDIRAHEAPRASRPYSSY
LDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDHHYSRT
KKAWNDHLKRMQEIERRYPSRYGLYLRDKPLTPNSLVPLEYEPEDKLLAE
LNKAIRV*
BS20335.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-PN | 157 | CG6803-PN | 1..157 | 1..157 | 835 | 100 | Plus |
Mf-PG | 157 | CG6803-PG | 1..157 | 1..157 | 835 | 100 | Plus |
Mf-PA | 157 | CG6803-PA | 1..157 | 1..157 | 835 | 100 | Plus |
Mf-PE | 166 | CG6803-PE | 1..163 | 1..156 | 802 | 94.5 | Plus |
Mf-PQ | 168 | CG6803-PQ | 1..160 | 1..153 | 796 | 95 | Plus |