BS20337.complete Sequence
1727 bp assembled on 2011-01-28
GenBank Submission: KX800432
> BS20337.complete
GAAGTTATCAGTCGACATGCCTCGATTTTTCCAGTTGACGTGGGCTCTTC
TTTTGATTTTAATAGGTTTCACCACTGCTGTTACTTTTATCGGAGATGAT
CCTGTGGTGGAGCTCTCCTTGGGCAGAATCCAAGGAGATACTATGCAGAG
CTTTGGGAACAAGACAATCTACGCATTCAGAGGAATACGATACGCGCAAT
CTCCAGTGGGACAGCTCCGGTTCGCCAATCCAGTTCCGGAAACTAGTTGG
GGTGACGAGGTGTTCAACGCAACATCGGATTCCCTCGTTTGTCCACAACC
AGGAGTAGTTTCTTTAATGAGTGAAGATTGCCTAAAGATCAACGTTTTCA
CGAAGAGCTTCGAGGACAAATTCCCAGTGATGGTGTATATTCATGGCGGA
GCCAATGTCCTGGGAAGTGGACACAGCAGCTATGAAGCAGGACCTCAATA
TTTGCTAGATCAGGACGTAGTTTTTGTGGCTTTTAACTATCGCCTTGGAG
CTCTGGGCTTTCTAAGCACAAATAGCAGTGAGACAAAGGGAAACTTTGGT
TTCCTCGATCAGGTGATGGCTCTGGAATGGGTAAGGGATCACATATCACA
CTTTGGTGGTGATCCAGAGTTGGTGACTATTATCGGAATAAGTGCTGGCT
CGATGGCAGTCAGTCTACACTTGGCCTCGCCCCTTTCCGCAGGTCTCTTC
CATCGGGCAATCCTCATGAGTGGATCGGCCACCAATCACTTTGATATAGA
TAACCTTTTTTGGACACGAAAACTGGCTCGTGAGCTGGGTTGTCCAATGT
ATGATCCCACGGATGTGGTGGAGTGTCTCCGAAACGAAACGTGGACACGC
ATTGTGGAAGTTTGCAAGGCATGGGAAACGTATCAGCTTGTTAATATGAA
GTGGAACTACGAGATCGATGGACACTTTCTACACAACCATCCTACGGAGC
TAATCAAGGAGGGAAATTTCAACAAGGTTCCCCTGCTAATCAGTTTCACG
GCCAATGAATTCGATTACAATGCAAATGTGCACTTGGAAAACCAGCATCT
ATTACACGATTTTGCCTCAAACTTTGTGGATTATGCCCCAGAGTTGTTTC
TCTATCGCCACGATGCACAAATTGGAGAGAAACTGAAGGATTTTTATCTA
GGTGACAATACTACGGAAATCAATTCGGAAAACATAGAGAACTTTGGACA
GATCTTTTCTGATGCATATATTGGGCATGGTGTCCATCGTCTGGTCCAAC
TAGCTAGTCACTTTACCCCAGTTTATTATACGCGAATGGATTACGTGGGT
GATCAAAGTCTCTCAGCTCCTTTGAATGGTGAAAACAAGCCCGTAGGAGT
GGGCCATGCGGATGATCTGCACTATGTGTTGCCGGGTTATTGGTATGGTC
CCTTAATGGCGGCAAATGATTCGGATGTTTTTATGATGGAACGTTTAACC
AGCTGGTTTACCCACTTTGCCAAAACAGGGACACCCCTAAACAGCACGGA
TATTTGGCCACCCTGCAACTCGACGGTCTTGAAGATGCTCTACAACGGGG
TGGTGACCCAGGTGGGTTCGCCCGGCTATTCGAATCGATATGCCGTCTGG
GACAAACTGTTTCCCACGGCCGCCCAGGGCGGAGGCGCTGCCTTGAAACT
CAGTTTCGCCGTGGCCATCGCCACTGGTGTGGCCTCCCGGCTCATCGGGA
AATTAATGTAGAAGCTTTCTAGACCAT
BS20337.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3841-RB | 1695 | CG3841-PB | 1..1695 | 17..1711 | 8475 | 100 | Plus |
| CG3841-RA | 1695 | CG3841-PA | 1..1695 | 17..1711 | 8475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3841-RB | 2051 | CG3841-RB | 121..1815 | 17..1711 | 8475 | 100 | Plus |
| CG3841-RA | 1967 | CG3841-RA | 37..1731 | 17..1711 | 8475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:30:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9589666..9590677 | 17..1028 | 5060 | 100 | Plus |
| 2L | 23513712 | 2L | 9590739..9591191 | 1028..1480 | 2265 | 100 | Plus |
| 2L | 23513712 | 2L | 9591315..9591547 | 1479..1711 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:30:38 has no hits.
BS20337.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:57 Download gff for
BS20337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3841-RB | 121..1815 | 17..1711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:44 Download gff for
BS20337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3841-RA | 37..1731 | 17..1711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:50 Download gff for
BS20337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3841-RA | 37..1731 | 17..1711 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:50 Download gff for
BS20337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9589666..9590677 | 17..1028 | 100 | -> | Plus |
| 2L | 9590740..9591190 | 1029..1479 | 100 | -> | Plus |
| 2L | 9591316..9591547 | 1480..1711 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:44 Download gff for
BS20337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9589666..9590677 | 17..1028 | 100 | -> | Plus |
| arm_2L | 9590740..9591190 | 1029..1479 | 100 | -> | Plus |
| arm_2L | 9591316..9591547 | 1480..1711 | 100 | | Plus |
BS20337.pep Sequence
Translation from 16 to 1710
> BS20337.pep
MPRFFQLTWALLLILIGFTTAVTFIGDDPVVELSLGRIQGDTMQSFGNKT
IYAFRGIRYAQSPVGQLRFANPVPETSWGDEVFNATSDSLVCPQPGVVSL
MSEDCLKINVFTKSFEDKFPVMVYIHGGANVLGSGHSSYEAGPQYLLDQD
VVFVAFNYRLGALGFLSTNSSETKGNFGFLDQVMALEWVRDHISHFGGDP
ELVTIIGISAGSMAVSLHLASPLSAGLFHRAILMSGSATNHFDIDNLFWT
RKLARELGCPMYDPTDVVECLRNETWTRIVEVCKAWETYQLVNMKWNYEI
DGHFLHNHPTELIKEGNFNKVPLLISFTANEFDYNANVHLENQHLLHDFA
SNFVDYAPELFLYRHDAQIGEKLKDFYLGDNTTEINSENIENFGQIFSDA
YIGHGVHRLVQLASHFTPVYYTRMDYVGDQSLSAPLNGENKPVGVGHADD
LHYVLPGYWYGPLMAANDSDVFMMERLTSWFTHFAKTGTPLNSTDIWPPC
NSTVLKMLYNGVVTQVGSPGYSNRYAVWDKLFPTAAQGGGAALKLSFAVA
IATGVASRLIGKLM*
BS20337.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:54:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3841-PB | 564 | CG3841-PB | 1..564 | 1..564 | 3011 | 100 | Plus |
| CG3841-PA | 564 | CG3841-PA | 1..564 | 1..564 | 3011 | 100 | Plus |
| CG4757-PB | 550 | CG4757-PB | 9..548 | 12..536 | 795 | 34.9 | Plus |
| CG4757-PA | 550 | CG4757-PA | 9..548 | 12..536 | 795 | 34.9 | Plus |
| CG4382-PB | 580 | CG4382-PB | 43..570 | 28..533 | 776 | 36 | Plus |
