BS20339.complete Sequence
1337 bp assembled on 2011-01-07
GenBank Submission: KX803507
> BS20339.complete
GAAGTTATCAGTCGACATGTATCGCTGCAAAAATTGGTTTTGTGCGCGCA
GCAACAACAACAACTACGTCGATGTGGCACTAAGCGAGGCACCACCCATC
CATCCCAGTGCAGCCACAACAACCACACCGAATAGCCGCAACTTTAGCGC
CAGCAACAATAATAACGTGCGAAGCAACAGCAGCAAAAGTAATCAGCAAA
CAGCGGCACATAGAGGCGCTACCACCCATCCCACCCAAATCCCCCACACA
CACCACCCAAGCACCACCCACTCGACCGATGAGGCTTCTCCGCCACAGGC
CCACGTGGTTACCTTTCTGGACGAATCCACAGCAGGCGGGAGCAACGGTG
CCGTGACCAGCAGCCGCCTGGTCACCACCGCCGAACTGCATCAGGCCCAT
ATGCTGGAGCACCACTCGAATCTGGACGCCATCGAGCAGGCGGACGACTT
CATCTACGGTCCTGGCGCAGGACTTTCGCTGTGCGACGACAGCCTGCCAT
CGGCCAAAAACTGCTATCGACTGGTTATGCTCGGCTCATCACGCGCCGGC
AAGTCATCGATTGTGGCACGTTTCCTGGGCAATCGGTTCGAGGAGGCCTA
CACGCCGACCATCGAGGAGTTCCACCGCAAATTGTATCGCATACGGAATG
AAGTCTTTCAATTGGATATTTTGGATACTTCTGGCTATCATCCGTTTCCC
GCAATGCGACGTTTATCATTTCTAACTGGGGATCTCTTCATCCTCGTCTT
CAGCATGGATTCCCGCGAGTCCTTCGAGGAGGTGGTTCGCCTGCGGGAGA
ACATTCTGGAGACCAAGTGGGCTGCACTAAATCCCGGCTCCGGGTTTAAG
AAGAAGAGTCTTCCAAAGATACCCATGATATTGGCGGGAAATAAATGTGA
TCGAGACTTTAAAACTGTTCAGGTGGACGAGGTGATGGGCTACATCGCTG
GCCAGGACAACTGCTGCACCTTTGTGGAGTGCTCGGCTCGTCAGAATTAC
CGCATCGATGACCTATTCCACTCGCTGTTTACGGTCTCCAATCTGCCGCT
GGAGATGACCCCCAATCATCATCGTCGATTGGTCTCCGTTTTTGGGGCGC
CCTCGCCACTCCCACCACACGGATCTGCGGTGGGCGGGACCAAGAAGAAT
GCCCTGTCCATCAAGAGGAGATTCAGCGATGCCTGCGGTGTGGTGACGCC
GAACGCGAGGAGACCCAGCATCCGCACCGATCTCAATCTGATGAGATCCA
AGACGATGGCGCTCAATGAGGGCGAGGGTGTGCGGAGTCCTTCGCGTTGG
AACCGCTGCGCCCTGATGTAGAAGCTTTCTAGACCAT
BS20339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8641-RB | 1305 | CG8641-PB | 1..1305 | 17..1321 | 6525 | 100 | Plus |
| CG8641-RA | 1305 | CG8641-PA | 1..1305 | 17..1321 | 6525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8641-RB | 3264 | CG8641-RB | 550..1864 | 9..1323 | 6545 | 99.8 | Plus |
| CG8641-RA | 2288 | CG8641-RA | 550..1864 | 9..1323 | 6545 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7062357..7062882 | 534..9 | 2600 | 99.6 | Minus |
| 3L | 28110227 | 3L | 7060330..7060740 | 1323..913 | 2055 | 100 | Minus |
| 3L | 28110227 | 3L | 7061849..7062044 | 729..534 | 980 | 100 | Minus |
| 3L | 28110227 | 3L | 7060854..7061038 | 912..728 | 925 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..7004 | 48..346 | 181 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6864 | 110..233 | 166 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2395 | 117..208 | 145 | 66.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1046..1143 | 106..208 | 141 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2446 | 111..214 | 134 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2729..2840 | 111..227 | 130 | 61.5 | Plus |
BS20339.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:32 Download gff for
BS20339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8641-RA | 558..1862 | 17..1321 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:43 Download gff for
BS20339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8641-RA | 558..1862 | 17..1321 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:06 Download gff for
BS20339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8641-RA | 558..1862 | 17..1321 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:06 Download gff for
BS20339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7060332..7060740 | 913..1321 | 100 | <- | Minus |
| 3L | 7060854..7061037 | 729..912 | 100 | <- | Minus |
| 3L | 7061850..7062043 | 535..728 | 100 | <- | Minus |
| 3L | 7062357..7062874 | 17..534 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:43 Download gff for
BS20339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7055457..7055974 | 17..534 | 100 | | Minus |
| arm_3L | 7053432..7053840 | 913..1321 | 100 | <- | Minus |
| arm_3L | 7053954..7054137 | 729..912 | 100 | <- | Minus |
| arm_3L | 7054950..7055143 | 535..728 | 100 | <- | Minus |
BS20339.pep Sequence
Translation from 16 to 1320
> BS20339.pep
MYRCKNWFCARSNNNNYVDVALSEAPPIHPSAATTTTPNSRNFSASNNNN
VRSNSSKSNQQTAAHRGATTHPTQIPHTHHPSTTHSTDEASPPQAHVVTF
LDESTAGGSNGAVTSSRLVTTAELHQAHMLEHHSNLDAIEQADDFIYGPG
AGLSLCDDSLPSAKNCYRLVMLGSSRAGKSSIVARFLGNRFEEAYTPTIE
EFHRKLYRIRNEVFQLDILDTSGYHPFPAMRRLSFLTGDLFILVFSMDSR
ESFEEVVRLRENILETKWAALNPGSGFKKKSLPKIPMILAGNKCDRDFKT
VQVDEVMGYIAGQDNCCTFVECSARQNYRIDDLFHSLFTVSNLPLEMTPN
HHRRLVSVFGAPSPLPPHGSAVGGTKKNALSIKRRFSDACGVVTPNARRP
SIRTDLNLMRSKTMALNEGEGVRSPSRWNRCALM*
BS20339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:53:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8641-PB | 434 | CG8641-PB | 1..434 | 1..434 | 2292 | 100 | Plus |
| CG8641-PA | 434 | CG8641-PA | 1..434 | 1..434 | 2292 | 100 | Plus |
| CG8500-PA | 233 | CG8500-PA | 13..181 | 161..340 | 308 | 37.2 | Plus |
| CG13375-PC | 277 | CG13375-PC | 9..245 | 157..391 | 277 | 32.4 | Plus |
| CG13375-PB | 306 | CG13375-PB | 38..274 | 157..391 | 277 | 32.4 | Plus |
