Clone BS20340 Report

Search the DGRC for BS20340

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:203
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG6333-RA
Protein status:BS20340.pep: full length peptide match
Sequenced Size:653

Clone Sequence Records

BS20340.complete Sequence

653 bp assembled on 2011-01-07

GenBank Submission: KX802855

> BS20340.complete
GAAGTTATCAGTCGACATGACCAAGGGCGTGAGGATTTGCAACGATGGAT
TGCCTGGTTTGCCGAATGAAAGGCCATATTCCCGAAGAACTTTAGATACG
CGGCAAAAGACTCAGAAGATGTCCTCCAGGCCATCTAGGAAACCATTGCA
GTCTCTACAAACTGTCGGTCGGAATACGAGTTCCAGCCTGAAGCGCATAG
GAAGTCCGATCTCCGAGGAAGAATTTGGTGTCCTGGTGCAGCAGGATTGT
AAGGCAGAGCAGCATCACACCGATCGCCAAAACCTGGCGGACATAATCCT
TATGCAGGCCCGTCGCATCGAGAAGCAGCAGCGGGAGATGAAAAGAATAA
AGGCGCACTATGAGCGCCAGGTGTCCACCATCAAGAACAATGCCATCATG
CTGGAGTCGCATCTGCAAAAGGTGCTGGCCAGTGTCGAAAGGGATCGGGC
CAAGCGGATTGGCCACCACTGCCAGGACATGCTCGGTGCCGTGGAGAAGC
TGCAAAGGAGCGACATCCAAGTGAAGCCGCAATCTTCGGCCAACCAATTG
CTGATCCAGTATCTTCACTCCAAGAAAATTTCGCATTCGACCAAGAAGTC
CAATGAAAACACAAGTAGGTACAGGAATATGTTGTGAAAGCTTTCTAGAC
CAT

BS20340.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6333-RB 621 CG6333-PB 1..621 17..637 3105 100 Plus
CG6333-RA 621 CG6333-PA 1..621 17..637 3105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6333-RB 2133 CG6333-RB 1397..2018 17..638 3110 100 Plus
CG6333-RA 1028 CG6333-RA 296..917 17..638 3110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17480244..17480865 638..17 3110 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:32:03 has no hits.

BS20340.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:05 Download gff for BS20340.complete
Subject Subject Range Query Range Percent Splice Strand
CG6333-RB 1397..2016 17..636 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:14 Download gff for BS20340.complete
Subject Subject Range Query Range Percent Splice Strand
CG6333-RA 296..915 17..636 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:31 Download gff for BS20340.complete
Subject Subject Range Query Range Percent Splice Strand
CG6333-RA 296..915 17..636 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:31 Download gff for BS20340.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17480246..17480865 17..636 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:14 Download gff for BS20340.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17473346..17473965 17..636 100   Minus

BS20340.pep Sequence

Translation from 16 to 636

> BS20340.pep
MTKGVRICNDGLPGLPNERPYSRRTLDTRQKTQKMSSRPSRKPLQSLQTV
GRNTSSSLKRIGSPISEEEFGVLVQQDCKAEQHHTDRQNLADIILMQARR
IEKQQREMKRIKAHYERQVSTIKNNAIMLESHLQKVLASVERDRAKRIGH
HCQDMLGAVEKLQRSDIQVKPQSSANQLLIQYLHSKKISHSTKKSNENTS
RYRNML*

BS20340.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6333-PB 206 CG6333-PB 1..206 1..206 1045 100 Plus
CG6333-PA 206 CG6333-PA 1..206 1..206 1045 100 Plus