BS20341.complete Sequence
851 bp assembled on 2011-01-07
GenBank Submission: KX803064
> BS20341.complete
GAAGTTATCAGTCGACATGCAGATCAAAGAATTCCGTGTGACTTTGCCAT
TGACTGTGGAAGAGTATCAAGTTGCACAATTATTCTCGGTGGCCGAGGCG
TCAAAGGAGAATACGGGTGGCGGCGAGGGCATCGAGGTGTTAAAAAACGA
ACCCTTCGAAGATTTTCCCCTGCTGGGTGGCAAATACAATTCCGGTCAAT
ATACATATAAGATCTACCATCTGCAATCAAAAGTTCCAGCCTACATAAGA
CTATTGGCACCCAAGGGCTCATTGGAGATCCACGAGGAGGCATGGAATGC
CTATCCCTATTGTCGAACGATTATCACGAACCCCAAGTTTATGAAAGATG
CTTTCAAAATAATCATCGACACTCTGCACGTCGGAGATGCGGGCGATTCA
GAAAATGTGCACGAGCTGACGCCGGATAAGCTGAAAGTGCGAGAGATAGT
GCACATCGACATTGCCAACGATCCGGTGCTGCCCGCGGACTACAAGCCCG
ATGAGGATCCAACCACCTACCAGTCAAAGAAGACGGGCCGCGGTCCCCTG
GTGGGATCCGACTGGAAAAAGCATGTTAATCCTGTCATGACCTGCTACAA
GCTGGTCACGTGCGAGTTCAAATGGTTCGGCCTGCAAACAAGAGTAGAGA
ATTTCATACAGAAATCGGAGCGTCGCCTCTTTACAAACTTCCATCGCCAA
GTTTTCTGTTCAACCGATCGCTGGTACGGTCTAACAATGGAGGACATTCG
CGCCATCGAGGACCAGACGAAGGAGGAGCTGGACAAGGCGCGGCAGGTGG
GCGAGGTGCGGGGTATGCGCGCGGATGCCGATTAAAAGCTTTCTAGACCA
T
BS20341.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:32:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vib-RA | 819 | CG5269-PA | 1..819 | 17..835 | 4095 | 100 | Plus |
| vib-RC | 819 | CG5269-PC | 1..819 | 17..835 | 4095 | 100 | Plus |
| vib-RB | 822 | CG5269-PB | 1..822 | 17..835 | 3490 | 95.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vib-RA | 1178 | CG5269-RA | 211..1029 | 17..835 | 4095 | 100 | Plus |
| vib-RC | 3395 | CG5269-RC | 118..936 | 17..835 | 4095 | 100 | Plus |
| vib-RB | 3491 | CG5269-RB | 211..1032 | 17..835 | 3490 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19218159..19218338 | 696..517 | 900 | 100 | Minus |
| 3R | 32079331 | 3R | 19219189..19219341 | 328..176 | 765 | 100 | Minus |
| 3R | 32079331 | 3R | 19217893..19218032 | 835..696 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 19219403..19219518 | 178..63 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 19218402..19218511 | 516..407 | 550 | 100 | Minus |
| 3R | 32079331 | 3R | 19218967..19219047 | 408..328 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:32:17 has no hits.
BS20341.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:05 Download gff for
BS20341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vib-RA | 211..1027 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:16 Download gff for
BS20341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vib-RA | 211..1027 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:36 Download gff for
BS20341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vib-RC | 118..934 | 17..833 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:36 Download gff for
BS20341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19217895..19218031 | 697..833 | 100 | <- | Minus |
| 3R | 19218159..19218338 | 517..696 | 100 | <- | Minus |
| 3R | 19218402..19218511 | 407..516 | 100 | <- | Minus |
| 3R | 19218969..19219046 | 329..406 | 100 | <- | Minus |
| 3R | 19219189..19219340 | 177..328 | 100 | <- | Minus |
| 3R | 19219405..19219516 | 65..176 | 100 | <- | Minus |
| 3R | 19219597..19219627 | 34..64 | 100 | <- | Minus |
| 3R | 19226015..19226031 | 17..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:16 Download gff for
BS20341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15045127..15045238 | 65..176 | 100 | <- | Minus |
| arm_3R | 15045319..15045349 | 34..64 | 100 | <- | Minus |
| arm_3R | 15051737..15051753 | 17..33 | 100 | | Minus |
| arm_3R | 15043617..15043753 | 697..833 | 100 | <- | Minus |
| arm_3R | 15043881..15044060 | 517..696 | 100 | <- | Minus |
| arm_3R | 15044124..15044233 | 407..516 | 100 | <- | Minus |
| arm_3R | 15044691..15044768 | 329..406 | 100 | <- | Minus |
| arm_3R | 15044911..15045062 | 177..328 | 100 | <- | Minus |
BS20341.pep Sequence
Translation from 16 to 834
> BS20341.pep
MQIKEFRVTLPLTVEEYQVAQLFSVAEASKENTGGGEGIEVLKNEPFEDF
PLLGGKYNSGQYTYKIYHLQSKVPAYIRLLAPKGSLEIHEEAWNAYPYCR
TIITNPKFMKDAFKIIIDTLHVGDAGDSENVHELTPDKLKVREIVHIDIA
NDPVLPADYKPDEDPTTYQSKKTGRGPLVGSDWKKHVNPVMTCYKLVTCE
FKWFGLQTRVENFIQKSERRLFTNFHRQVFCSTDRWYGLTMEDIRAIEDQ
TKEELDKARQVGEVRGMRADAD*
BS20341.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:52:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vib-PA | 272 | CG5269-PA | 1..272 | 1..272 | 1450 | 100 | Plus |
| vib-PC | 272 | CG5269-PC | 1..272 | 1..272 | 1450 | 100 | Plus |
| vib-PB | 273 | CG5269-PB | 1..273 | 1..272 | 1355 | 94.1 | Plus |
| rdgB-PG | 1237 | CG11111-PG | 1..271 | 1..263 | 539 | 43.4 | Plus |
| rdgBbeta-PA | 273 | CG17818-PA | 4..249 | 3..257 | 521 | 43.5 | Plus |
