BS20342.complete Sequence
830 bp assembled on 2011-01-07
GenBank Submission: KX803604
> BS20342.complete
GAAGTTATCAGTCGACATGGCCGATTTACTCAATGGAACCCTAATCATTT
CGGAGGATCCTGTCCGCCTGCCACTCATCGGAAGTCCATGGCCATCGCTG
ACCATCGTTTCGCTCTATCTGCTGTTTGTCTTGAAGTTAGGCAGGAAGTT
CATGGAGAACAGAAAGCCCTACGATCTCCGCAGAGTCATCAGGGCATACA
ACATTATGCAGATTGTCTACAACGGCGTTATTCTGATAGCGGGTCTTCAC
TTTTTGTTCGTCCTGAAGGCCTACGACCTGCGATGCATCACCAAACTGCC
GCTGGATCACGAGCTGAAGAGCCGAGAAAGATGGTTGACCTACTCGTACT
TCTTCAACAAGTTCATGGATCTGCTGGAGACTGTGTTCTTTGTGCTGCGC
AAGAAGGATCGCCAGATATCCTTCCTGCACGTCTTCCACCACCTGGTGAT
GTCCTTTGGCGGATACCTGCACATTACCTTCAACGGCTATGGAGGCACTC
TGTTCCCATTATGCCTGCTCAATGTGGCGGTCCATGTGATCATGTACGCC
TACTACTACCTGTCCTCCGTCAGCAAGGATGTGCAGACGAGTCGGTGGAA
GAAGTACATCACCATTGTCCAGCTGGTCCAGTTCATCCTGGTGCTGGCGA
ACTTTAGCTACACCCTGATGCAGCCCGATTGCAATGCCTCCCGAACTGTG
ATATATACTGGCATGTTCATTTCCACGACCTTCATCCTGATGTTTGCCAA
CTTCTACATTCACAACTACATACTGAATGGAAGCAAACAGAAGAGCGCGT
TGAAATCCGATTGAAAGCTTTCTAGACCAT
BS20342.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8534-RA | 798 | CG8534-PA | 1..798 | 17..814 | 3990 | 100 | Plus |
| CG9458-RA | 795 | CG9458-PA | 271..429 | 284..442 | 390 | 83 | Plus |
| CG9459-RA | 798 | CG9459-PA | 271..429 | 284..442 | 360 | 81.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8534-RA | 990 | CG8534-RA | 59..856 | 17..814 | 3990 | 100 | Plus |
| CG9458-RA | 900 | CG9458-RA | 281..439 | 284..442 | 390 | 83 | Plus |
| CG9459-RA | 901 | CG9459-RA | 300..458 | 284..442 | 360 | 81.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9813232..9813805 | 241..814 | 2870 | 100 | Plus |
| 3R | 32079331 | 3R | 9812805..9813030 | 17..242 | 1130 | 100 | Plus |
| 3R | 32079331 | 3R | 9819375..9819533 | 442..284 | 390 | 83 | Minus |
| 3R | 32079331 | 3R | 9817871..9818029 | 442..284 | 360 | 81.8 | Minus |
| 3R | 32079331 | 3R | 9814592..9814843 | 386..634 | 355 | 77 | Plus |
| 3R | 32079331 | 3R | 22533152..22533236 | 442..358 | 215 | 83.5 | Minus |
| 3R | 32079331 | 3R | 22555518..22555601 | 359..442 | 195 | 82.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:32:21 has no hits.
BS20342.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:06 Download gff for
BS20342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8534-RA | 59..855 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:18 Download gff for
BS20342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8534-RA | 59..855 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:39 Download gff for
BS20342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8534-RA | 59..855 | 17..813 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:39 Download gff for
BS20342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9812805..9813029 | 17..241 | 100 | -> | Plus |
| 3R | 9813233..9813804 | 242..813 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:18 Download gff for
BS20342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5638527..5638751 | 17..241 | 100 | -> | Plus |
| arm_3R | 5638955..5639526 | 242..813 | 100 | | Plus |
BS20342.pep Sequence
Translation from 16 to 813
> BS20342.pep
MADLLNGTLIISEDPVRLPLIGSPWPSLTIVSLYLLFVLKLGRKFMENRK
PYDLRRVIRAYNIMQIVYNGVILIAGLHFLFVLKAYDLRCITKLPLDHEL
KSRERWLTYSYFFNKFMDLLETVFFVLRKKDRQISFLHVFHHLVMSFGGY
LHITFNGYGGTLFPLCLLNVAVHVIMYAYYYLSSVSKDVQTSRWKKYITI
VQLVQFILVLANFSYTLMQPDCNASRTVIYTGMFISTTFILMFANFYIHN
YILNGSKQKSALKSD*
BS20342.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8534-PA | 265 | CG8534-PA | 1..265 | 1..265 | 1377 | 100 | Plus |
| eloF-PA | 257 | CG16905-PA | 6..257 | 14..264 | 793 | 59.1 | Plus |
| CG9458-PA | 264 | CG9458-PA | 15..254 | 14..252 | 710 | 56.2 | Plus |
| CG9459-PA | 265 | CG9459-PA | 5..263 | 1..262 | 709 | 53.2 | Plus |
| CG16904-PA | 262 | CG16904-PA | 11..250 | 14..252 | 682 | 54.6 | Plus |
