BS20348.complete Sequence
2525 bp assembled on 2011-01-28
GenBank Submission: KX804234
> BS20348.complete
GAAGTTATCAGTCGACATGAACGCTGCCAGCAACGTCGCTCTGTTTAAGT
TTCGCACGCTGATAAAGAGGACCTCGCCCATAATGCGGCCAAAGCTTAGT
GCAATTCTCATGCTCTTGCTGCTGTGCACTTTGGCAGCGGCCAATGACCT
CAAGGATCTGCTAGAGGACAGCACCACCAGTTCCAGCACCAGCACCACCT
CCAGCACCATTCCCTCTTCAGTAACCTCGCCCACCACGCCCACCGCCTAT
GTGGTATCGGCGGCAGCGGTTCCCGCCCTCGTTGCCGGCAGAGGAAAGTC
CAAGTCCACATCCGGAAAGTATGTGAACAAGAGCTCGCCGAGGAAGCGCA
AGGCGGAGCAGGTGTCCTCGCTGCCGCTGCCCGTGGATGATGCCCTCATG
GAGTGGAAGTGCCCCAATATCACGGGTACCCGGAACGCGGAACTCGAGTG
CGGATGCGATCTGCCTCACACACTTCGATGCAACATTGATCTGCACGGGA
TGATGCTCCTGGCGGATCGACTACGCACTTCTCCCTACTCCATATCATTG
CTGGACTGTTCCTTGCGCAACGTGACCTTCCTGAGCGACGCGAAGATCTT
CGACAATGTCTCGCTCCACGGACTAGTAATCTCGTCCGGAGAGATCAAGC
GGGTACACAAGTCCGCCTTCCTGGGCATTCGAGGACCGCTGCAAGCACTC
GGTCTGCCCGGGAACGCACTGATGAGCGTGCCCTGGAACGCCCTGTCCAC
GCTGAGCGCCTTGGAGCGCTTGGATCTGGCCAATAACAAGATCAAGGCTC
TGGGAACGGCGGACTTTGTGGGATTGACTAGCTTGGTTTATCTGGAGCTG
AGCAACAATCAAATCTCTAGCATATCCCAACGCACGTTTGTTAATCTTCG
AAAGCTGGAGGTGCTGAAGCTGGGCGGGAATCGATTGGGTGACTATGCCC
AAAGCTTGAGGTCACTGAGTCAGTGCCTCAGTCTGCGACAACTGGACTTG
CAGGCCAATAACCTGAATGGACCACTGAGCGAGCAAACGCTGCCCGGAAT
GAGGAACCTCGAGAGCTTGAATCTCAATCGGAATCTGATCAAGAGCATCC
AGAACAAGGCTTTGGCCAATTTCTCGAGACTGGTGAGCCTCTCACTGCGT
CACAACCAGATCGATGTGCTGCAGGATCACGCCTTCTTCGGCTTGGGTGC
ACTGGACAGCTTGGATCTGAGCTACAACGGCATCGTAGCCATCTCCAGTG
CCTCACTGCAGCATTTGTCACGTTTGACCGTACTTGATCTTACACACAAC
TTCCTGCGAGCACTGACCTCGGATTTGATAGCACCGCTACCATCTCTTCG
GGAGTTGCGATTGGCGGGCAATGACATCTCGATTGTGGCAAGAAACGCCA
TGGACGGAGCGAGGGAACTGGAGAGCCTGCAGATGCAGGAGAATCCCCTG
TCCTGTGACTGCAGCATTCGTCCATTTGCCGAGTGGCTGCAGGAGTCGCA
GCTCCATTCCAGTCTGAGTGCCTCGTGTGTGACGCCCCCGAGACTGGAAG
GAGCTCCTCTACTCCAGGTGCCCGTGGAGACGCTCAGCTGCGACATGGAC
AACGTGGAGAAGGATAACGCCAACATCATGCAGCACCTGGAAACGTTAGC
CAAGCCCAATCAGACGTCGCCCATCAAAGATTTGTCCGAAGAGATTATTC
TACATGAGCTGCACTTTTCGACAGACTATGGACTGATCCTCACCTGGCTA
CTCAATCTGAGCAAAAAGGACTACATGTGCGATGCAATCTTTGTTTACAA
GGAGGAGCACATCAACGAAATTCTAATAGATAACTCACCGATCCATTGCG
AGAGTAAAGTGGTCAATGGCCAGAACACAGTCAGCGTCATAGTGCCGGAC
AGTTCCTCCCTGGAAATAGGCGAGAGCTATCGATTTTGTCTGGTCATGAT
CCAGGAGCAGAAGCCCGACTCGGAACTGAACATCGGCTGCTCCAACATCA
CGCGACTGGAGCGGAGCAGTCCAGGTGCCGTTCCCGTGTCCCGTCAGTAT
CAGCGACGTCCCTACTATAACGCCAATGAGCTGAAGCCCGAGGTGGTGCA
CGATGCTGGTGAGGATTACCAGGTGAATCAACGCCGCTTCAATTCGGTGG
TAGGAAGTCAACCGCAACAGACGCAGCAATCGACTTTGCTGCACAGCTAC
ACGGTCATTGATTCGCTAAACAAGAGCTTCTTGCCGGGACTGGGTCTTGG
AGTGCTGGTCACCTCCGTGCTGGTTCTGATCTGGGGAGCCACGCGGATTC
GGCAGACTGGCGGTAGCAGTGGCGGCGGTGGGAGGAATGGCGATAGCATC
GATAGCAACAGCAGCAGCATGCACAACAATAACAACAACAGCAGACCGGG
CACTCCGACGGCCACCACCTGTTACGCCGCCTCGGATCACATAGCCCGCC
TGGCGGATGCGGAAAATGGGACGCGCTACCTCAAGCTGCAGGCAACGACG
AGCCTGTGAAAGCTTTCTAGACCAT
BS20348.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:30:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lrt-RC | 2493 | CG11136-PC | 1..2493 | 17..2509 | 12465 | 100 | Plus |
| Lrt-RB | 2427 | CG11136-PB | 1..2427 | 83..2509 | 12135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:30:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lrt-RC | 3660 | CG11136-RC | 605..3097 | 17..2509 | 12465 | 100 | Plus |
| Lrt-RB | 3660 | CG11136-RB | 605..3097 | 17..2509 | 12465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:30:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20658315..20659503 | 505..1693 | 5945 | 100 | Plus |
| 2R | 25286936 | 2R | 20659923..20660507 | 1925..2509 | 2925 | 100 | Plus |
| 2R | 25286936 | 2R | 20657228..20657635 | 98..505 | 2040 | 100 | Plus |
| 2R | 25286936 | 2R | 20659567..20659715 | 1692..1840 | 745 | 100 | Plus |
| 2R | 25286936 | 2R | 20659780..20659866 | 1840..1926 | 435 | 100 | Plus |
| 2R | 25286936 | 2R | 20646964..20647046 | 17..99 | 415 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:30:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6802 | 2315..2394 | 148 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6879 | 2311..2393 | 145 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2402 | 2345..2394 | 142 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6843 | 2310..2393 | 141 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2360..2441 | 2310..2394 | 139 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2409 | 2340..2418 | 136 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2487..2536 | 2347..2396 | 133 | 74 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2788..2828 | 2354..2394 | 133 | 80.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6801..6850 | 2345..2394 | 133 | 74 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3244..3322 | 2309..2390 | 133 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6781 | 2340..2394 | 131 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6811 | 2315..2394 | 130 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2404 | 2345..2393 | 128 | 73.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1132 | 2341..2394 | 126 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6769 | 2343..2394 | 125 | 71.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1146 | 2310..2393 | 125 | 63.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1087..1165 | 2310..2388 | 125 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2298..2344 | 2348..2393 | 124 | 76.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6790 | 2345..2394 | 124 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2483..2535 | 2340..2392 | 121 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6705..6760 | 2338..2394 | 120 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1543..1591 | 2345..2396 | 118 | 73.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6858..6907 | 2345..2394 | 115 | 70 | Plus |
BS20348.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:57 Download gff for
BS20348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lrt-RB | 357..2848 | 17..2508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:30 Download gff for
BS20348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lrt-RB | 605..3096 | 17..2508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:38 Download gff for
BS20348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lrt-RB | 605..3096 | 17..2508 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:38 Download gff for
BS20348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20646964..20647046 | 17..99 | 100 | -> | Plus |
| 2R | 20657230..20657635 | 100..505 | 100 | -> | Plus |
| 2R | 20658316..20659503 | 506..1693 | 100 | -> | Plus |
| 2R | 20659569..20659715 | 1694..1840 | 100 | -> | Plus |
| 2R | 20659781..20659866 | 1841..1926 | 100 | -> | Plus |
| 2R | 20659925..20660506 | 1927..2508 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:30 Download gff for
BS20348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16547286..16547371 | 1841..1926 | 100 | -> | Plus |
| arm_2R | 16547074..16547220 | 1694..1840 | 100 | -> | Plus |
| arm_2R | 16534469..16534551 | 17..99 | 100 | -> | Plus |
| arm_2R | 16544735..16545140 | 100..505 | 100 | -> | Plus |
| arm_2R | 16545821..16547008 | 506..1693 | 100 | -> | Plus |
| arm_2R | 16547430..16548011 | 1927..2508 | 100 | | Plus |
BS20348.pep Sequence
Translation from 16 to 2508
> BS20348.pep
MNAASNVALFKFRTLIKRTSPIMRPKLSAILMLLLLCTLAAANDLKDLLE
DSTTSSSTSTTSSTIPSSVTSPTTPTAYVVSAAAVPALVAGRGKSKSTSG
KYVNKSSPRKRKAEQVSSLPLPVDDALMEWKCPNITGTRNAELECGCDLP
HTLRCNIDLHGMMLLADRLRTSPYSISLLDCSLRNVTFLSDAKIFDNVSL
HGLVISSGEIKRVHKSAFLGIRGPLQALGLPGNALMSVPWNALSTLSALE
RLDLANNKIKALGTADFVGLTSLVYLELSNNQISSISQRTFVNLRKLEVL
KLGGNRLGDYAQSLRSLSQCLSLRQLDLQANNLNGPLSEQTLPGMRNLES
LNLNRNLIKSIQNKALANFSRLVSLSLRHNQIDVLQDHAFFGLGALDSLD
LSYNGIVAISSASLQHLSRLTVLDLTHNFLRALTSDLIAPLPSLRELRLA
GNDISIVARNAMDGARELESLQMQENPLSCDCSIRPFAEWLQESQLHSSL
SASCVTPPRLEGAPLLQVPVETLSCDMDNVEKDNANIMQHLETLAKPNQT
SPIKDLSEEIILHELHFSTDYGLILTWLLNLSKKDYMCDAIFVYKEEHIN
EILIDNSPIHCESKVVNGQNTVSVIVPDSSSLEIGESYRFCLVMIQEQKP
DSELNIGCSNITRLERSSPGAVPVSRQYQRRPYYNANELKPEVVHDAGED
YQVNQRRFNSVVGSQPQQTQQSTLLHSYTVIDSLNKSFLPGLGLGVLVTS
VLVLIWGATRIRQTGGSSGGGGRNGDSIDSNSSSMHNNNNNSRPGTPTAT
TCYAASDHIARLADAENGTRYLKLQATTSL*
BS20348.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:54:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lrt-PC | 830 | CG11136-PC | 1..830 | 1..830 | 4200 | 100 | Plus |
| Lrt-PB | 808 | CG11136-PB | 1..808 | 23..830 | 4094 | 100 | Plus |
| haf-PF | 852 | CG14351-PF | 83..413 | 176..525 | 335 | 32.6 | Plus |
| haf-PD | 981 | CG14351-PD | 83..413 | 176..525 | 335 | 32.6 | Plus |
| haf-PB | 981 | CG14351-PB | 83..413 | 176..525 | 335 | 32.6 | Plus |
