BS20355.complete Sequence
1289 bp assembled on 2011-01-07
GenBank Submission: KX805390
> BS20355.complete
GAAGTTATCAGTCGACATGGTTGTTACGTGTGAGATCAGCTTCGATAATA
ATAAACATGGTACTTTCTACGCCGGTCAGCTGGTAAAAGGATGCGCGACC
CTTAAATGTGACAGGTCCAAGGAGGTTCAAGCTGTGCTGCTCAAGGTAGT
CGGATATTCTATAACCAAGTGGAGCGAAAAGAGTCTGGGCTCGACAAAAC
TCTACGTGGGCCGGGAGGATTATCTATCATCAAATACTTATCTCGTGGGT
TCCGAGCAAAACAACACTCACAACAACACTCACAGACTCACTATTGAGGC
TGGGGTTCACAGCTACAACTTCACCTGCCAGCTGCCCTATCAATGCCCCT
CGTCCTTTGAGGGTCGCCATGGATGCATCCGCTATATAGTGAAAGTCCTG
CTGATCAGACCGTGGAAGTTCGATCAGGCCTACACAAAGGGCTTCACGGT
TCTCAAGATGCTGGATCTCAACTTTGACACTCCCCAGCTAAAGTCCGCTG
CCCACAGCGAGGGTTACCGCACCTTTTGCTGTGGTCCATGCAAGACGGAT
CCTTTAAAACTGGAGCTGCACCTTCCACAAGCAGGCTACGTTCCTGGCCA
GAAGATTCCCGTGACCATTGTGGTAGTCAACAACACTGCCGTAGCCGTCT
CCGAAATCCGACTCTCTCTGGTAATGCTGGTGAGATACTACAGCGTCAGT
CCTGAACACTCTCGAGTGGAGCGATTAATAATATCGCGAGCTAAGGGGGA
ATCGGTGCTGAAGCAGTGCACCCGATCCCAGACCATCGATTTGCCCGTAC
CCTCAACGCCGCCCACCTGCGTGGAGTTGAGCAACCTCATCCAGATCGCC
TACCAACTGGAGGTTGAGGCGTTGGTTAAGAGTCTACGCGAACAACAGCT
GATGGTCATGCCGGTTACCGTTGGCACCATTCCTCTGGCGGTTTCGGGCA
TTGTGGTTCAACAACCTCCCCGGCGGAGCGCCCACTACGAAGGACCGGAT
TCCAGAAGGAATCCTCCCGACGAGCTACCCATGGTTACCGCACTTGAGAG
CTTGCCCAGCGACCTGGCATCCAGTGCTGCTGATTCAGCGCTCCCCAATT
ATGAGGAGTCCCGTCACACTCAGCGGGGCAATATCAACGAAGAGGAACTA
CATGCCTTCGGGAGCAATGAGTTTGCTCCACTTTATCCCGTGTATAGTAT
ACCTAGTCCTACGCCCGTGCTCACGGCAAACGCCCGGAATGCGGGATTCG
TCAACCAAAGTTTTGTCAAATAGAAGCTTTCTAGACCAT
BS20355.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18747-RB | 1257 | CG18747-PB | 1..1257 | 17..1273 | 6285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18747-RB | 1408 | CG18747-RB | 46..1303 | 17..1274 | 6290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7781556..7782152 | 1088..492 | 2985 | 100 | Minus |
| 3R | 32079331 | 3R | 7782396..7782628 | 493..261 | 1165 | 100 | Minus |
| 3R | 32079331 | 3R | 7780989..7781177 | 1274..1086 | 945 | 100 | Minus |
| 3R | 32079331 | 3R | 7782686..7782816 | 260..130 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 7783287..7783401 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:33:44 has no hits.
BS20355.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:12 Download gff for
BS20355.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18747-RB | 1..1251 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:38 Download gff for
BS20355.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18747-RB | 46..1296 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:44:14 Download gff for
BS20355.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18747-RB | 46..1296 | 17..1267 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:44:14 Download gff for
BS20355.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7780996..7781174 | 1089..1267 | 100 | <- | Minus |
| 3R | 7781556..7782150 | 494..1088 | 100 | <- | Minus |
| 3R | 7782396..7782628 | 261..493 | 100 | <- | Minus |
| 3R | 7782686..7782814 | 132..260 | 100 | <- | Minus |
| 3R | 7783287..7783401 | 17..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:38 Download gff for
BS20355.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3606718..3606896 | 1089..1267 | 100 | <- | Minus |
| arm_3R | 3607278..3607872 | 494..1088 | 100 | <- | Minus |
| arm_3R | 3608118..3608350 | 261..493 | 100 | <- | Minus |
| arm_3R | 3608408..3608536 | 132..260 | 100 | <- | Minus |
| arm_3R | 3609009..3609123 | 17..131 | 100 | | Minus |
BS20355.pep Sequence
Translation from 16 to 1272
> BS20355.pep
MVVTCEISFDNNKHGTFYAGQLVKGCATLKCDRSKEVQAVLLKVVGYSIT
KWSEKSLGSTKLYVGREDYLSSNTYLVGSEQNNTHNNTHRLTIEAGVHSY
NFTCQLPYQCPSSFEGRHGCIRYIVKVLLIRPWKFDQAYTKGFTVLKMLD
LNFDTPQLKSAAHSEGYRTFCCGPCKTDPLKLELHLPQAGYVPGQKIPVT
IVVVNNTAVAVSEIRLSLVMLVRYYSVSPEHSRVERLIISRAKGESVLKQ
CTRSQTIDLPVPSTPPTCVELSNLIQIAYQLEVEALVKSLREQQLMVMPV
TVGTIPLAVSGIVVQQPPRRSAHYEGPDSRRNPPDELPMVTALESLPSDL
ASSAADSALPNYEESRHTQRGNINEEELHAFGSNEFAPLYPVYSIPSPTP
VLTANARNAGFVNQSFVK*
BS20355.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18747-PB | 418 | CG18747-PB | 1..418 | 1..418 | 2177 | 100 | Plus |
| CG18745-PA | 433 | CG18745-PA | 1..401 | 1..399 | 879 | 41.9 | Plus |
| CG18746-PA | 438 | CG18746-PA | 1..434 | 2..418 | 707 | 36.6 | Plus |
| CG18748-PC | 409 | CG18748-PC | 1..394 | 1..399 | 704 | 36.6 | Plus |
| CG18748-PB | 359 | CG18748-PB | 1..344 | 1..399 | 575 | 31.8 | Plus |
