BS20357.complete Sequence
1931 bp assembled on 2011-02-17
GenBank Submission: KX803614
> BS20357.complete
GAAGTTATCAGTCGACATGGGGAATAGTCTGATAACGAGTGGAAAACCGA
GTCAGCGCCGTGAAAAGAGGCTTTTCGAGAGGCTGAGCTGCAGCTACGCT
CAGACCCCCAACAGAATGGAGTTGAACTTGAATCCCCTGCTGGCCATCGC
CCGTTCCATTGCGGCGCCACCGACACCGCCTCCAACCCCGGAAAAGTTGG
ACTCGGATAAGGATAAGGAGGGTTCCTCCAAAGCCGCCATCGAACTGCTG
CCTAACGAGATGTGGCTAGAGATCATGTCCTACCTTTCGTACAATGACCT
GCTGCAATTGCGGATGGTGTCCTGGCGGTGCCGTGATCTGGTTCATCGTC
GTCGATTCATGGAGAAAGGGAAGGTGATAGTGACGCAACACAACCTGGAG
GCGATCCACAAGCATGCGAAGGGCGGAAATTGCTATTTGAGCTTCGAGCG
GATTGAATTAAGAAATCTACGCCAGTGCCGCCAGTTGGAGAACTTTCTGC
GTCTTGTGGGCCACGAAGTGAAGCATCTGCAAGTGCGCCATGCTCCTGTT
TTCCGGAATCTGGATGGCAAGTTACCAAACCTTAAGGTTCTGACCATTGC
CACGACTATGTCGATGGATGACCAGCATCTGGCGGCGATGGATGACCTGG
ATATGAAGCAGTTTTCCCACCTTGTGGGATTCGAATGCGATGGCGTGAGT
TTGGACGCGGTGCTTAAGATGCGAATGTTGTTGCAGCTGCGACGAACGGA
GAACAAGGTGCAACTGCGGCACCTGCAATTCGAATTCCGGCGGAACAACG
AAAATGCTCTGCTGGATGTCCTACAGGATCATGCGGAAACCTTGGTGTGC
GTCAATTTATTCTTCAGCTGCTCGCCGGGCATTGATACGCGTGAATGGTG
CCGAGCGTTCGAAAATATGCACAATCTGCGAACTCTCAAGCTTTCGGGAA
ATTGTCATCTGGTCCTGTTGGAAGCTGTCCTAAGAGCCGTTCCGGAGTCA
GCACCAATCCGTCAACTGGATTTGACCGGAATGTTATCGCTAACCAACGA
ATTACTGCTCTATGTAGCTGGCAAGTGGCAAAGCACTCTGAAGGTGCTCG
ATCTAATGTTTTGTGTCCAACTCAACGCCAATTGCATTGATGCACTGCGC
CAGCTGAGTGGTCGGTTGGAGGCACTGACCATGGCTTACTGCAGAGAGCT
GACTGGAACGGGTTTGCTTCAAGGGCTGGCCGGCGATATTAACTACAGCC
TGCAGGAGCTGCATCTGGAGGAAACCATATTTTTGGACGAGAGCTCCATG
TGCCAGCTGCTGGAGCGACTGCCCAATCTTCGACGCCTCAGTTTGGATAA
CTGCCGCCAAGCGGTGACGGATCGCACAATGGCCACCATTTGCCAATACC
AGACAAGACTGAGAAATCTTAACATCGAATACTGTATGAAGATTACGGAT
CAAGGCCTGATGGGATATGGAGACACTCCCTATCCTATAAGTCGACTACG
CGGATTGAAGGAACTTAACCTTAGGGGCTGTCGCAATGTCACGGATAGTT
CTCTAATGGTTGGGCTGAAATTACCAGAGCTACGAGCCCTATCTTTGGGC
TACTGCAACCGTCTCACTTCAGAGGGATTTGAGGCATTGACCCAAAACTG
TCCATCCCTGGAGGCACTTTGTGTGTCCAGTTGCATGGCAGTGGATGATG
AGACTGTACTCAATATAGTAAGCAATCTAAAGCGTTTGCGAGTTCTCAAC
CTGAGCAACTGCACCAAGTTGACCCTGCAATCGATCCACCACATTCTGGC
GCATGGACACAATCTAGTCCAGCTGATCGCCTGCTCCATAGACGGCATGG
ATCATGAGCAGGCCCAGCGCATTCTAGAGTCGCAGCGACCACAAATGAAG
CAGGTGCTTCTATAGAAGCTTTCTAGACCAT
BS20357.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:52:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12402-RC | 2016 | CG12402-PC | 1..1899 | 17..1915 | 9495 | 100 | Plus |
| CG12402-RB | 1920 | CG12402-PB | 1..1899 | 17..1915 | 9495 | 100 | Plus |
| CG12402-RA | 1899 | CG12402-PA | 1..1899 | 17..1915 | 9495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:52:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12402-RC | 3476 | CG12402-RC | 506..2405 | 16..1915 | 9500 | 100 | Plus |
| CG12402-RB | 3476 | CG12402-RB | 506..2405 | 16..1915 | 9500 | 100 | Plus |
| CG12402-RA | 3476 | CG12402-RA | 506..2405 | 16..1915 | 9500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14106142..14107435 | 1395..102 | 6470 | 100 | Minus |
| 3R | 32079331 | 3R | 14105559..14106078 | 1915..1396 | 2600 | 100 | Minus |
| 3R | 32079331 | 3R | 14107729..14107816 | 103..16 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:52:23 has no hits.
BS20357.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:27 Download gff for
BS20357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12402-RA | 342..2240 | 17..1915 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:17 Download gff for
BS20357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12402-RA | 507..2405 | 17..1915 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:53 Download gff for
BS20357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12402-RA | 507..2405 | 17..1915 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:53 Download gff for
BS20357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14105559..14106078 | 1396..1915 | 100 | <- | Minus |
| 3R | 14106142..14107433 | 104..1395 | 100 | <- | Minus |
| 3R | 14107729..14107815 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:17 Download gff for
BS20357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9931281..9931800 | 1396..1915 | 100 | <- | Minus |
| arm_3R | 9931864..9933155 | 104..1395 | 100 | <- | Minus |
| arm_3R | 9933451..9933537 | 17..103 | 100 | | Minus |
BS20357.pep Sequence
Translation from 16 to 1914
> BS20357.pep
MGNSLITSGKPSQRREKRLFERLSCSYAQTPNRMELNLNPLLAIARSIAA
PPTPPPTPEKLDSDKDKEGSSKAAIELLPNEMWLEIMSYLSYNDLLQLRM
VSWRCRDLVHRRRFMEKGKVIVTQHNLEAIHKHAKGGNCYLSFERIELRN
LRQCRQLENFLRLVGHEVKHLQVRHAPVFRNLDGKLPNLKVLTIATTMSM
DDQHLAAMDDLDMKQFSHLVGFECDGVSLDAVLKMRMLLQLRRTENKVQL
RHLQFEFRRNNENALLDVLQDHAETLVCVNLFFSCSPGIDTREWCRAFEN
MHNLRTLKLSGNCHLVLLEAVLRAVPESAPIRQLDLTGMLSLTNELLLYV
AGKWQSTLKVLDLMFCVQLNANCIDALRQLSGRLEALTMAYCRELTGTGL
LQGLAGDINYSLQELHLEETIFLDESSMCQLLERLPNLRRLSLDNCRQAV
TDRTMATICQYQTRLRNLNIEYCMKITDQGLMGYGDTPYPISRLRGLKEL
NLRGCRNVTDSSLMVGLKLPELRALSLGYCNRLTSEGFEALTQNCPSLEA
LCVSSCMAVDDETVLNIVSNLKRLRVLNLSNCTKLTLQSIHHILAHGHNL
VQLIACSIDGMDHEQAQRILESQRPQMKQVLL*
BS20357.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:22:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12402-PC | 671 | CG12402-PC | 1..632 | 1..632 | 3270 | 100 | Plus |
| CG12402-PB | 639 | CG12402-PB | 1..632 | 1..632 | 3270 | 100 | Plus |
| CG12402-PA | 632 | CG12402-PA | 1..632 | 1..632 | 3270 | 100 | Plus |
| CG8272-PA | 689 | CG8272-PA | 14..635 | 78..596 | 253 | 22.3 | Plus |
| CG8272-PB | 710 | CG8272-PB | 14..635 | 78..596 | 253 | 22.3 | Plus |
| CG8272-PA | 689 | CG8272-PA | 294..675 | 187..585 | 165 | 21.9 | Plus |
