BS20358.complete Sequence
1550 bp assembled on 2011-01-07
GenBank Submission: KX801846
> BS20358.complete
GAAGTTATCAGTCGACATGGTCTACTATCAATTGCGGGCCTCCAGGACGC
CACTTCTCTGCTGTTTGGGTCTTTTTGTTGTCTATCTGCTCTACCAGTCA
CTTGGATCACTCCAAGTGTTGAATAACCCACAGGGAACTATATCACAGCC
AGCATCCCGGCCCAAAAAGGTTGCTGTCGTTCACCATGGAGCCCATCCAG
GAATCGATACCGAAGGCAAGGAGAGCGCGGGATCGCAGCAGGAACCGAAT
CTGGAGGAACTGTTGCGGAGCAAAGAGGACGTGGACTGGGTGCGTCTGCG
GGCTGACCAGTGTGCCCCGTATCCCCGCTACGAAGACATCGAGTTTCCGA
ATCCCTACTTCCAGCTAACAAGGCATGAAAATCTATCTTACTATCTCTAT
GGGGCATACTACGACCGGAGGCCCAGGATACCGGAGATGGTGGTCCTCGG
AATGGCCACCTACAATGGTTCCTATCCGGCCACCTATTTGCAGGTTTGGT
ACGATGGCGATAACCAGCCAGAAAAGTTGCCCGTATACCAAAGCAAATTG
GGCTGGTACAAGGAGTGGGGCCTTCCAGAGGGTGTTGTATTTCCTACGCT
CCTAACGTTTCAAATGAAATCCCAAAGGGTTCCACAGCTGGTGAGTCTGG
TCTTCGATCCGTGTGCGGTGCCAACGAATGCCTTTAAGGTGGTACCACCG
CCACCCGAGGAGCCACCAAATGCACAACGTCCAAAGCGAATCGGAGTTTG
TGTGAAATATCTCCGATTTCCCGACGTCGACATGACCGATAGATTTGTGG
AATGGCTGGAACTGATGAGGCTACTGGGTGCCACCAAGGTGACCGCCTTC
GATATTGGACTCCTTATGCCCAACACAAGGAGAACCCTTGCCCACTACAC
GGGAGCTGGTGATGGATTCTTGGATCTGCGGAAATTCCGTTTTCCCAATG
AGACCGCAGATCACGAGACATTCCGTGCGATGATTATTGAGGTGCTGCTG
TACAATGACTGTTTATACCGGAATCTGTACGATTTCGATTTTGTGGCCGT
GGTGGATGTGGATGAGGTAATAATGCCACTGGGTGAGCATCGCACTTGGC
AAGATTTGCTGACGCATTTGCAGGTTCAGGATGTGAATAGCACCACTCGC
TCTAGCTATTGCTTCCGCAATGTGTATTTTTCCAAGCAGCTACCCGTGGA
CGAAAGCATTCCGGAACAATTCTTTATGCTGCGTCATGTGATCCGGGTGG
CGGAACACTTGGATCCATACTCTGCGATCAAGTGCCTTCATGATACCAGC
TATGTTACGTTGCTGCATAATCATTTTCCCTTTCAATGGATGAACGCGAG
TGATCCGTACCATGTTGGCATCGATCTTGGCCAGATGCAGCACTATCGCT
ATACGGAAAATCTCAAATCTTTGGTTGAACCGCCGCCCGTAAGGGATGAT
AACATTCGACGATTCCAGCACCAACTCATCCACAACTCACTGGAAGTCCA
TCGGCAGCTGGCCCAGAGTCGAGCGGCATATTGAAAGCTTTCTAGACCAT
BS20358.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12715-RB | 1518 | CG12715-PB | 1..1518 | 17..1534 | 7590 | 100 | Plus |
| CG12715-RA | 1518 | CG12715-PA | 1..1518 | 17..1534 | 7590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12715-RB | 2107 | CG12715-RB | 37..1554 | 17..1534 | 7590 | 100 | Plus |
| CG12715-RA | 1959 | CG12715-RA | 37..1554 | 17..1534 | 7590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13053400..13054764 | 1534..170 | 6825 | 100 | Minus |
| X | 23542271 | X | 13055139..13055292 | 170..17 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:32:59 has no hits.
BS20358.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:08 Download gff for
BS20358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12715-RA | 1..1517 | 17..1533 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:23 Download gff for
BS20358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12715-RA | 37..1553 | 17..1533 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:54 Download gff for
BS20358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12715-RA | 37..1553 | 17..1533 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:54 Download gff for
BS20358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13055139..13055292 | 17..170 | 100 | | Minus |
| X | 13053401..13054763 | 171..1533 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:23 Download gff for
BS20358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12947434..12948796 | 171..1533 | 100 | <- | Minus |
| arm_X | 12949172..12949325 | 17..170 | 100 | | Minus |
BS20358.pep Sequence
Translation from 16 to 1533
> BS20358.pep
MVYYQLRASRTPLLCCLGLFVVYLLYQSLGSLQVLNNPQGTISQPASRPK
KVAVVHHGAHPGIDTEGKESAGSQQEPNLEELLRSKEDVDWVRLRADQCA
PYPRYEDIEFPNPYFQLTRHENLSYYLYGAYYDRRPRIPEMVVLGMATYN
GSYPATYLQVWYDGDNQPEKLPVYQSKLGWYKEWGLPEGVVFPTLLTFQM
KSQRVPQLVSLVFDPCAVPTNAFKVVPPPPEEPPNAQRPKRIGVCVKYLR
FPDVDMTDRFVEWLELMRLLGATKVTAFDIGLLMPNTRRTLAHYTGAGDG
FLDLRKFRFPNETADHETFRAMIIEVLLYNDCLYRNLYDFDFVAVVDVDE
VIMPLGEHRTWQDLLTHLQVQDVNSTTRSSYCFRNVYFSKQLPVDESIPE
QFFMLRHVIRVAEHLDPYSAIKCLHDTSYVTLLHNHFPFQWMNASDPYHV
GIDLGQMQHYRYTENLKSLVEPPPVRDDNIRRFQHQLIHNSLEVHRQLAQ
SRAAY*
BS20358.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12715-PB | 505 | CG12715-PB | 1..505 | 1..505 | 2725 | 100 | Plus |
| CG12715-PA | 505 | CG12715-PA | 1..505 | 1..505 | 2725 | 100 | Plus |
| CG3655-PD | 563 | CG3655-PD | 104..529 | 90..493 | 540 | 32.3 | Plus |
| CG3655-PB | 563 | CG3655-PB | 104..529 | 90..493 | 540 | 32.3 | Plus |
| CG3655-PA | 563 | CG3655-PA | 104..529 | 90..493 | 540 | 32.3 | Plus |
