BS20359.complete Sequence
1136 bp assembled on 2011-01-07
GenBank Submission: KX804163
> BS20359.complete
GAAGTTATCAGTCGACATGGCTGCTATTGCCGCCCTGCCAACAACAACGT
TGCGGCGCAACAACAACAACAACACCAAAGGGATCAAATCCCGTCGCAAT
GAGCGTAACATCCTGACATTCTACGAAAAGATTGCCGTAATCCGTTACTA
TGACGAGACCAACATCTCTAGGAACAGTCTGGCCAAGATGTTCCACTGCT
GCGCCACCCAAATACGTAGAATCTTGGATAAGAAAAAGGATCTGCTGCAG
CAGTTGGCCACCTTAAGCGAGGCAGATGCCTCCATTATAATCGAAGAGAT
GACGCGCAAGCGCCGCAAGTTCGAAATGAGTGCCATCAGCTTCCTACTAC
ACGAGTGGGTGGAAAGGTGCATCCAAATGCAGTTGAACATCAGCATAAGG
AACCAAAAACTGAAGGAAACCGCCATCCGGATGGCAGCTGTGTTGAACCT
GCCATCCTTCAGACCATCCTATCGATGGCTAAGCCGATTCCGCAACAAGT
ACAAGTACGAGGCCGATGAATTGGGCTACCAGGGCGAAAATCCCTTGAAC
CAGGACCTGCCTGTCGAAGACATCATTGTGGAGTTTAAGCATGCACTGCC
GAACTTCATGCAACGGGAGCTGGATAATCCAGGCGAAGCAATCTCAAAAG
CAGCTGTTATGGCAGATTTTGTCAATCTCTCCAGCGAAAACAGTATCATG
TCCGATCATCCAGAGGGGGATAATGAAGTGGAGCTGGTAACATGTGAGCC
CACCATGATGTCCTCACCATCCAGCACACCAGATGCTGCAGAGGGGGAAA
TACCTCTGCAGGCACATGGCGACCAGGAAAACCCGGATGATCAGATTAAC
GCTGGAACCAGTACTCTTCTGAATGGGGTTTTTCCGCATCTAGCCATTAT
CCACCAGTTCGCTCTGATGAACTCGGATGTACAGGCATTGGAACTTATCT
CCCAGCTGGGAGTGCACATGCAGCAACAGGCTGTTTCTGGAGCTTATCAT
AACCTGTCGCTGGCGACTACCGATGGAGATGGGCAAGACGATCCAGGAGA
AATCGCTCTTTCGGAACTGCCACCGGGAAGTATTTACGCCGATATCGATG
ACATCGAATTGATCGAGTAAAAGCTTTCTAGACCAT
BS20359.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebd2-RB | 1104 | CG12972-PB | 1..1104 | 17..1120 | 5520 | 100 | Plus |
| ebd2-RA | 1104 | CG12972-PA | 1..1104 | 17..1120 | 5520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebd2-RB | 1821 | CG12972-RB | 448..1553 | 17..1122 | 5530 | 100 | Plus |
| ebd2-RA | 1606 | CG12972-RA | 233..1338 | 17..1122 | 5530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21345036..21346076 | 1122..82 | 5205 | 100 | Minus |
| 3L | 28110227 | 3L | 21346689..21346754 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:33:03 has no hits.
BS20359.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:08 Download gff for
BS20359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12972-RA | 233..1334 | 17..1118 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:25 Download gff for
BS20359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebd2-RA | 233..1334 | 17..1118 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:57 Download gff for
BS20359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebd2-RA | 233..1334 | 17..1118 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:57 Download gff for
BS20359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21345040..21346075 | 83..1118 | 100 | <- | Minus |
| 3L | 21346689..21346754 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:25 Download gff for
BS20359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21338140..21339175 | 83..1118 | 100 | <- | Minus |
| arm_3L | 21339789..21339854 | 17..82 | 100 | | Minus |
BS20359.pep Sequence
Translation from 16 to 1119
> BS20359.pep
MAAIAALPTTTLRRNNNNNTKGIKSRRNERNILTFYEKIAVIRYYDETNI
SRNSLAKMFHCCATQIRRILDKKKDLLQQLATLSEADASIIIEEMTRKRR
KFEMSAISFLLHEWVERCIQMQLNISIRNQKLKETAIRMAAVLNLPSFRP
SYRWLSRFRNKYKYEADELGYQGENPLNQDLPVEDIIVEFKHALPNFMQR
ELDNPGEAISKAAVMADFVNLSSENSIMSDHPEGDNEVELVTCEPTMMSS
PSSTPDAAEGEIPLQAHGDQENPDDQINAGTSTLLNGVFPHLAIIHQFAL
MNSDVQALELISQLGVHMQQQAVSGAYHNLSLATTDGDGQDDPGEIALSE
LPPGSIYADIDDIELIE*
BS20359.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:52:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebd2-PB | 367 | CG12972-PB | 1..367 | 1..367 | 1878 | 100 | Plus |
| ebd2-PA | 367 | CG12972-PA | 1..367 | 1..367 | 1878 | 100 | Plus |
