BS20369.complete Sequence
755 bp assembled on 2011-01-07
GenBank Submission: KX806206
> BS20369.complete
GAAGTTATCAGTCGACATGAGTAGAGTTATTAATGGCTTTAAAAGTGCTG
TAAAAGCTACAAATTATACACCGCTTGTTAGAAATGCAGCACAATTTAAT
CAATTCCAGTTGCCAGAAATACGGAAATTTTCAGTTGAATCTTCGCCGGC
TTGTTGGAATTGCCAAAAGAAATCGGAATTAAAGCAGAATATGATATGTT
CGGACTGTGGACACTTGCAGGATGTTAACTCAGGAATAAATTACTTTAAA
CTGCTCAGCTTTCCCATTCAATTTTCTTTGGAGTCCCAGAAGTTGACAAG
AAGTTTTCGCCAGTTGCAGACCATTGTGCATCCCGATAAATATAGTAATA
AAACCTCACGGGAGCAAACAAACTCCTCAGACTGGAGTTCCCTCATCAAC
AAGGCATATAAAACGCTTTCCACGCCCATAGATCGTGGTCAGTACCTTCT
TCAACTGGAGGGCGAACAGATGCCGCAGGATAATAGCGCTCTTAACAAAG
AGTTTCTCATGGCCATGATGGAGCGGAACGAGGAGGTGGAGGATGCGGAA
GACACCCAAACGCTGGAGAATTTAAATATTCAGCTCATCAAGGAACTGGA
GGAGATGGCCCGGAAGTTAAATGCCCTTTTCGATAGCAAAGATCTTTCGG
GAGTCAAAGAAACCCTCGTAGAGATGAAGTACCTGCTGAGTATTCAGAAC
AGCATTAAACAGAAGCAACAAAGTTTGCTGGGCAGCTGAAAGCTTTCTAG
ACCAT
BS20369.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:34:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsc20-RA | 723 | CG34246-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsc20-RA | 927 | CG34246-RA | 70..793 | 17..740 | 3620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16233643..16234031 | 352..740 | 1945 | 100 | Plus |
3L | 28110227 | 3L | 16233196..16233417 | 17..238 | 1110 | 100 | Plus |
3L | 28110227 | 3L | 16233470..16233582 | 239..351 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:34:58 has no hits.
BS20369.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:18 Download gff for
BS20369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34246-RA | 77..798 | 17..738 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:59 Download gff for
BS20369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc20-RA | 70..791 | 17..738 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:44:40 Download gff for
BS20369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc20-RA | 70..791 | 17..738 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:44:40 Download gff for
BS20369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16233196..16233417 | 17..238 | 100 | -> | Plus |
3L | 16233470..16233582 | 239..351 | 100 | -> | Plus |
3L | 16233643..16234029 | 352..738 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:59 Download gff for
BS20369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16226570..16226682 | 239..351 | 100 | -> | Plus |
arm_3L | 16226296..16226517 | 17..238 | 100 | -> | Plus |
arm_3L | 16226743..16227129 | 352..738 | 100 | | Plus |
BS20369.pep Sequence
Translation from 16 to 738
> BS20369.pep
MSRVINGFKSAVKATNYTPLVRNAAQFNQFQLPEIRKFSVESSPACWNCQ
KKSELKQNMICSDCGHLQDVNSGINYFKLLSFPIQFSLESQKLTRSFRQL
QTIVHPDKYSNKTSREQTNSSDWSSLINKAYKTLSTPIDRGQYLLQLEGE
QMPQDNSALNKEFLMAMMERNEEVEDAEDTQTLENLNIQLIKELEEMARK
LNALFDSKDLSGVKETLVEMKYLLSIQNSIKQKQQSLLGS*
BS20369.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:52:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsc20-PA | 240 | CG34246-PA | 1..240 | 1..240 | 1219 | 100 | Plus |