Clone BS20369 Report

Search the DGRC for BS20369

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:203
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptHsc20-RA
Protein status:BS20369.pep: full length peptide match
Sequenced Size:755

Clone Sequence Records

BS20369.complete Sequence

755 bp assembled on 2011-01-07

GenBank Submission: KX806206

> BS20369.complete
GAAGTTATCAGTCGACATGAGTAGAGTTATTAATGGCTTTAAAAGTGCTG
TAAAAGCTACAAATTATACACCGCTTGTTAGAAATGCAGCACAATTTAAT
CAATTCCAGTTGCCAGAAATACGGAAATTTTCAGTTGAATCTTCGCCGGC
TTGTTGGAATTGCCAAAAGAAATCGGAATTAAAGCAGAATATGATATGTT
CGGACTGTGGACACTTGCAGGATGTTAACTCAGGAATAAATTACTTTAAA
CTGCTCAGCTTTCCCATTCAATTTTCTTTGGAGTCCCAGAAGTTGACAAG
AAGTTTTCGCCAGTTGCAGACCATTGTGCATCCCGATAAATATAGTAATA
AAACCTCACGGGAGCAAACAAACTCCTCAGACTGGAGTTCCCTCATCAAC
AAGGCATATAAAACGCTTTCCACGCCCATAGATCGTGGTCAGTACCTTCT
TCAACTGGAGGGCGAACAGATGCCGCAGGATAATAGCGCTCTTAACAAAG
AGTTTCTCATGGCCATGATGGAGCGGAACGAGGAGGTGGAGGATGCGGAA
GACACCCAAACGCTGGAGAATTTAAATATTCAGCTCATCAAGGAACTGGA
GGAGATGGCCCGGAAGTTAAATGCCCTTTTCGATAGCAAAGATCTTTCGG
GAGTCAAAGAAACCCTCGTAGAGATGAAGTACCTGCTGAGTATTCAGAAC
AGCATTAAACAGAAGCAACAAAGTTTGCTGGGCAGCTGAAAGCTTTCTAG
ACCAT

BS20369.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc20-RA 723 CG34246-PA 1..723 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc20-RA 927 CG34246-RA 70..793 17..740 3620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16233643..16234031 352..740 1945 100 Plus
3L 28110227 3L 16233196..16233417 17..238 1110 100 Plus
3L 28110227 3L 16233470..16233582 239..351 565 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:34:58 has no hits.

BS20369.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:18 Download gff for BS20369.complete
Subject Subject Range Query Range Percent Splice Strand
CG34246-RA 77..798 17..738 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:59 Download gff for BS20369.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc20-RA 70..791 17..738 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:44:40 Download gff for BS20369.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc20-RA 70..791 17..738 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:44:40 Download gff for BS20369.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16233196..16233417 17..238 100 -> Plus
3L 16233470..16233582 239..351 100 -> Plus
3L 16233643..16234029 352..738 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:59 Download gff for BS20369.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16226570..16226682 239..351 100 -> Plus
arm_3L 16226296..16226517 17..238 100 -> Plus
arm_3L 16226743..16227129 352..738 100   Plus

BS20369.pep Sequence

Translation from 16 to 738

> BS20369.pep
MSRVINGFKSAVKATNYTPLVRNAAQFNQFQLPEIRKFSVESSPACWNCQ
KKSELKQNMICSDCGHLQDVNSGINYFKLLSFPIQFSLESQKLTRSFRQL
QTIVHPDKYSNKTSREQTNSSDWSSLINKAYKTLSTPIDRGQYLLQLEGE
QMPQDNSALNKEFLMAMMERNEEVEDAEDTQTLENLNIQLIKELEEMARK
LNALFDSKDLSGVKETLVEMKYLLSIQNSIKQKQQSLLGS*

BS20369.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc20-PA 240 CG34246-PA 1..240 1..240 1219 100 Plus