Clone BS20374 Report

Search the DGRC for BS20374

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:203
Well:74
Vector:pDNR-Dual
Associated Gene/Transcriptwhip-RA
Protein status:BS20374.pep: gold
Sequenced Size:557

Clone Sequence Records

BS20374.complete Sequence

557 bp assembled on 2011-01-07

GenBank Submission: KX803190

> BS20374.complete
GAAGTTATCAGTCGACATGGGTACCTCTGTATTGGCCACGATGTGTGCTG
AGCGCCTGACCAAGCTCCTCGTCCGCTACTCCCGTGCTCAGCCTCCCGTG
GGGCGGAATCAGTCCCACTGCGTCGATAATGTGCTAAGTCCTTTGCCAAG
GAGCGAAGCAACTACCGCCTTCCTGAAGCCAATGAACAATGCTGGCCAGG
ACCATCCCCCATCGAAGTCGGCCAACAAGTGGCAGCCGATGGGTACCATC
ACGAGCATCGGACAGAGATTCCAGCGTGAGGCCATGGATGAGATTTGTGC
CAGGGCCAAGGACCGCCTGCTGCCAAAGACCGAACCTCGACGCTTGAACT
TCTCTAGAAATCACGCTTTCTTCCCCAACAAATCGAGAGGCCTTGAAGAT
TGGAAGAAACCGGAGGGTGGGCGGTACTCAGCTCCATTTGTCAGCCTATT
CCAGGCTCCGAACTGTCCTAGTCTGCCTAAGAAGTCGTTTTCTCATCCGC
TTGCCTTCGATCGTCAAAAACTGTATCGAGACTGCTATTAAAAGCTTTCT
AGACCAT

BS20374.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
whip-RA 501 CG34218-PA 1..501 41..541 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
whip-RA 860 CG34218-RA 182..706 17..541 2625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8362513..8363037 541..17 2625 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:35:32 has no hits.

BS20374.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:21 Download gff for BS20374.complete
Subject Subject Range Query Range Percent Splice Strand
whip-RA 182..704 17..539 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:06 Download gff for BS20374.complete
Subject Subject Range Query Range Percent Splice Strand
whip-RA 182..704 17..539 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:44:55 Download gff for BS20374.complete
Subject Subject Range Query Range Percent Splice Strand
whip-RA 182..704 17..539 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:44:55 Download gff for BS20374.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8362515..8363037 17..539 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:06 Download gff for BS20374.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4250020..4250542 17..539 100   Minus

BS20374.pep Sequence

Translation from 16 to 540

> BS20374.pep
MGTSVLATMCAERLTKLLVRYSRAQPPVGRNQSHCVDNVLSPLPRSEATT
AFLKPMNNAGQDHPPSKSANKWQPMGTITSIGQRFQREAMDEICARAKDR
LLPKTEPRRLNFSRNHAFFPNKSRGLEDWKKPEGGRYSAPFVSLFQAPNC
PSLPKKSFSHPLAFDRQKLYRDCY*

BS20374.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
whip-PA 166 CG34218-PA 1..166 9..174 899 100 Plus