BS20380.complete Sequence
1181 bp assembled on 2011-01-07
GenBank Submission: KX800502
> BS20380.complete
GAAGTTATCAGTCGACATGAAATCCCAGTACACCCGAAAAGCCAAACCAG
AGCCAGCAAAAACACCTACAGCACTAGAGCCCAAGACTAATACTAAACTG
GCGGGTCCAAAATCGAGATCCACGACGGTGGTGGTGAAGCGCCGGAATCG
CCGAAATTCCATTGATGGAGCAGCAGGAGGCTCCACTAGCGGCAATTCCG
AGGGGGGTAATTCCAGAGCAGCTTTCTCCGGAAGTGGTTATTCGGCAGGA
AATAATTCCGAAGGAGGTACATCGACTGGACGCAAGTCCATTGGTAGTAA
ATCCAGAGGAACTTATTTCCGAGCAAGTTATACCGGTGCTGGTAGTTCCG
GATCTGAGAATAGGTCGCCGCCCCAGCTTGTTCCGGTGCGGCGTAAGCCC
CTCAGTGATTACATGATGCTGGAGGAACAGCCATCTACCTCCAGTCGTCC
AACCACATCCTCTTCCTATTTATCGGACCAGGATCGTCCGATGAGTTATG
CCGCTGCGGTGGAATCACTCCCCATATCTAGGCTCAAGGTCAAGGTGGTG
CTATCCCCACGTCTCAAGCGGTCCGGCAATCAGCCGCCGATCAAGCGGCC
GAACCGTAAAAATTCACCCAACGCCAAGGTCAAATCGATCCCACCGACGC
AGTCTAAGACACACAATATCCAGCTAAATCCGAAGCGCAATATGGCCCAG
GTCCCGCCCCAATCCCGCGATGCCACCGTGAGTAACAAGTCGAATAACTT
AGCGCCACCTGGCGGAAACAAAAAGAAACCCAAGTCGAAGAAATCCCAAA
AGCTAAAGCAAAATCAACCACGATCAGAAGCTACTTCTCCGGAGCAGCCA
GCCTCACCAAAGTCTTTATCACCTTGTGATAATCAAAGTTCTCCGCCGAA
GTTCTCCGATTCCAACGCCTATCTGGACCATCACCATGAGAAAATGCAGC
GCTTTCTGGCTGAGCAAACGGCTGGTCAAAAGCCGTATCCCAACCGTGGC
CAAGTGAAGACCTGCAAACAAAATGTCCAGCTGCCAACCAATCGATCCCT
CTTCGACTTCGATGAGCGACTATTCAGACGCGGGGATCTCGAGTCGGCCG
CATTTTTGGCCCAGAACCAGGCCATGATACGCATGTGGCTGAACCCTAAT
ATGCTGATCTCCTAGAAGCTTTCTAGACCAT
BS20380.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:36:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9692-RB | 1149 | CG9692-PB | 1..1149 | 17..1165 | 5745 | 100 | Plus |
| CG9692-RC | 753 | CG9692-PC | 1..753 | 413..1165 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9692-RB | 1393 | CG9692-RB | 45..1193 | 17..1165 | 5745 | 100 | Plus |
| CG9692-RC | 1389 | CG9692-RC | 45..1189 | 17..1165 | 5650 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16705110..16706228 | 47..1165 | 5595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:36:13 has no hits.
BS20380.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:23 Download gff for
BS20380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9692-RB | 1..1149 | 17..1165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:15 Download gff for
BS20380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9692-RB | 45..1193 | 17..1165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:11 Download gff for
BS20380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9692-RB | 45..1193 | 17..1165 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:11 Download gff for
BS20380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16705017..16705046 | 17..46 | 100 | -> | Plus |
| 3L | 16705110..16706228 | 47..1165 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:15 Download gff for
BS20380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16698117..16698146 | 17..46 | 100 | -> | Plus |
| arm_3L | 16698210..16699328 | 47..1165 | 100 | | Plus |
BS20380.pep Sequence
Translation from 16 to 1164
> BS20380.pep
MKSQYTRKAKPEPAKTPTALEPKTNTKLAGPKSRSTTVVVKRRNRRNSID
GAAGGSTSGNSEGGNSRAAFSGSGYSAGNNSEGGTSTGRKSIGSKSRGTY
FRASYTGAGSSGSENRSPPQLVPVRRKPLSDYMMLEEQPSTSSRPTTSSS
YLSDQDRPMSYAAAVESLPISRLKVKVVLSPRLKRSGNQPPIKRPNRKNS
PNAKVKSIPPTQSKTHNIQLNPKRNMAQVPPQSRDATVSNKSNNLAPPGG
NKKKPKSKKSQKLKQNQPRSEATSPEQPASPKSLSPCDNQSSPPKFSDSN
AYLDHHHEKMQRFLAEQTAGQKPYPNRGQVKTCKQNVQLPTNRSLFDFDE
RLFRRGDLESAAFLAQNQAMIRMWLNPNMLIS*
BS20380.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9692-PB | 382 | CG9692-PB | 1..382 | 1..382 | 1973 | 100 | Plus |
| CG9692-PC | 250 | CG9692-PC | 1..250 | 133..382 | 1299 | 100 | Plus |
