Clone BS20381 Report

Search the DGRC for BS20381

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:203
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptHe-RB
Protein status:BS20381.pep: full length peptide match
Sequenced Size:503

Clone Sequence Records

BS20381.complete Sequence

503 bp assembled on 2011-01-07

GenBank Submission: KX806280

> BS20381.complete
GAAGTTATCAGTCGACATGCATAATTTTCAACTGACCGTCGTTTTCCTGG
CACTGTTCACTTTTACCAGTTCCTTTGGATACCGTTCTGAACATCCGCAC
AGAAAACCAATACATAGCAACCGTCCATCTCCAACTACTACAATGACAAC
AGATTCAACTTCAACTAGCTTTATGACAACAGATTCAACCCCAAGTGAAA
CGGAATCCACTTCGGATACATCTACTGAAGAAAGTACACAGATTTCTGAC
TTCACCGAAAGTTCAACCGAAAGTTCGACGACAGCAAAGATATTTTTAAA
GGACAATGAGATTTCAAAACCAGAAAACAGCAACACTTTACTTATCAGTG
TGTATGGCATTGTAATTACCTTGGCTATTTTAGTTGCTCTAATATACTGC
ATTCGACGCCATTATGGTTCATATTCTGTGAAAGAGCAATGCAAGCCCAT
TGAAAGTACCGCATATTTTAATAATATTAAATATTAAAAGCTTTCTAGAC
CAT

BS20381.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
He-RC 471 CG31770-PC 1..471 17..487 2355 100 Plus
He-RB 471 CG31770-PB 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
He-RC 553 CG31770-RC 59..531 17..489 2365 100 Plus
He-RB 673 CG31770-RB 59..531 17..489 2365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13972238..13972611 489..116 1870 100 Minus
2L 23513712 2L 13972791..13972889 115..17 495 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:36:22 has no hits.

BS20381.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:24 Download gff for BS20381.complete
Subject Subject Range Query Range Percent Splice Strand
He-RB 59..527 17..485 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:18 Download gff for BS20381.complete
Subject Subject Range Query Range Percent Splice Strand
He-RB 59..527 17..485 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:14 Download gff for BS20381.complete
Subject Subject Range Query Range Percent Splice Strand
He-RB 59..527 17..485 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:14 Download gff for BS20381.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13972242..13972611 116..485 100 <- Minus
2L 13972791..13972889 17..115 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:18 Download gff for BS20381.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13972242..13972611 116..485 100 <- Minus
arm_2L 13972791..13972889 17..115 100   Minus

BS20381.pep Sequence

Translation from 16 to 486

> BS20381.pep
MHNFQLTVVFLALFTFTSSFGYRSEHPHRKPIHSNRPSPTTTMTTDSTST
SFMTTDSTPSETESTSDTSTEESTQISDFTESSTESSTTAKIFLKDNEIS
KPENSNTLLISVYGIVITLAILVALIYCIRRHYGSYSVKEQCKPIESTAY
FNNIKY*

BS20381.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
He-PC 156 CG31770-PC 1..156 1..156 798 100 Plus
He-PB 156 CG31770-PB 1..156 1..156 798 100 Plus