BS20388.complete Sequence
581 bp assembled on 2011-01-07
GenBank Submission: KX800741
> BS20388.complete
GAAGTTATCAGTCGACATGAAGCTACAGTTGGCTCTCGTTCTATGTGGAT
TGACTCTGGCCTTGGGCCAGATTGTTCCCCGCAGCTCCTGGTGTCCTGTG
CCCATCTCGCCGCGAATGCCCAGGCTCATGGTACCGGTGCGACTGATTAT
CATCCATCATACAGTCACGGCCCCTTGCTTCAATCCGCATCAGTGCCAGT
TGGTACTTAGGCAAATTCGAGCCGATCATATGCGCAGAAAGTTCAGGGAT
ATTGGCTATAATTTCCTGATCGGCGGGGATGGTCGAATCTACGAGGGCTT
GGGTTTCGGCATCCGTGGCGAGCATGCTCCCCGCTATAACAGCCAGTCCA
TTGGCATTGCTTTCATTGGCAACTTCCAGACTGGATTACCTCCTTCGCAG
ATGCTCCAGGCTGCCCGAACCCTCATCCAAATCGCTGTGCAGCGTCGCCA
GGTTTCGCCCAACTATTCCGTGGTGGGTCATTGCCAAACGAAGGCCACTG
CTTGTCCGGGAATACACCTTCTCAACGAGCTCAAAAAGTGGCCAAATTGG
CGACCAAAGCCTTAGAAGCTTTCTAGACCAT
BS20388.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:36:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-SB2-RA | 549 | CG9697-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
| PGRP-SB2-RB | 576 | CG9697-PB | 1..529 | 17..565 | 2410 | 96.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-SB2-RA | 688 | CG9697-RA | 6..556 | 15..565 | 2755 | 100 | Plus |
| PGRP-SB2-RB | 668 | CG9697-RB | 6..536 | 15..565 | 2420 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16726546..16726911 | 15..380 | 1830 | 100 | Plus |
| 3L | 28110227 | 3L | 16726972..16727156 | 381..565 | 925 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:36:36 has no hits.
BS20388.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:25 Download gff for
BS20388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB2-RA | 8..556 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:23 Download gff for
BS20388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB2-RA | 8..556 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:21 Download gff for
BS20388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB2-RA | 8..556 | 17..565 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:21 Download gff for
BS20388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16726972..16727156 | 381..565 | 100 | | Plus |
| 3L | 16726548..16726911 | 17..380 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:23 Download gff for
BS20388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16719648..16720011 | 17..380 | 100 | -> | Plus |
| arm_3L | 16720072..16720256 | 381..565 | 100 | | Plus |
BS20388.pep Sequence
Translation from 16 to 564
> BS20388.pep
MKLQLALVLCGLTLALGQIVPRSSWCPVPISPRMPRLMVPVRLIIIHHTV
TAPCFNPHQCQLVLRQIRADHMRRKFRDIGYNFLIGGDGRIYEGLGFGIR
GEHAPRYNSQSIGIAFIGNFQTGLPPSQMLQAARTLIQIAVQRRQVSPNY
SVVGHCQTKATACPGIHLLNELKKWPNWRPKP*
BS20388.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:53:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-SB2-PA | 182 | CG9697-PA | 1..182 | 1..182 | 979 | 100 | Plus |
| PGRP-SB2-PB | 191 | CG9697-PB | 1..191 | 1..180 | 648 | 70.8 | Plus |
| PGRP-SB1-PA | 190 | CG9681-PA | 12..188 | 6..179 | 456 | 52 | Plus |
| PGRP-SA-PB | 203 | CG11709-PB | 60..203 | 40..182 | 344 | 44.4 | Plus |
| PGRP-SA-PA | 203 | CG11709-PA | 60..203 | 40..182 | 344 | 44.4 | Plus |
