BS20392.complete Sequence
923 bp assembled on 2011-01-07
GenBank Submission: KX805016
> BS20392.complete
GAAGTTATCAGTCGACATGAAATCTATCGTATTTTTATTGGCATTACTTC
TAAACGCGACAAGGAGTTATCGGGAAATTGTGAAAATGCCTGAGAAACAA
GTGGCACCTGTAATTAGTAATCTCGAGGATTTTGCGAATAATTTACCTGG
GTATCTAATTTCTGAAAGTCCAGTTGCCGTACTCCTGGACTACGATGGCA
CCCTAGCTCCCATTGCGGATAATCCAGCGAAGACCAAAATGCCCGTGGAA
CTGGAGGCCATACTGCACAAGATAGCCAAGCATCCCAAAGTTTTTCTCGC
TGTGATCTCGGGTCGCGGACTGAAAGATGTGCAAAAACAAGTAAATATCG
ATGGCATTACATATGCTGGTAATCATGGACTGGAAATCGAGTATCCCGAT
GGCTCCAGGCACGATTACGAGCTACCCACGGAGATCCAGAAAAACTACAC
ACAAATGGTTAGGGAGCTCAAGGAGAAGGTGGAGAAGAATGGAGCCTGGG
TGGAGGATAAGAAGGTGTCACTCACCTACCACTACAGAGATACGCCCGCA
GCCCTGAAGGATCAGCAAAAGCAGTTGGCTTCGGAGATCTGCACAAAGTT
CGGATTCCGTGCGAATCAGGCCCATGAAGCCATCGAAGCTAAGCCCCCAG
TGAATTGGAACAAGGGAGAGGCTGCCGTGTATATTCTGAAGCAGAAATTC
GGGGATAATTGGTCGCAGAAAGTGAGTGTGGTCTTTGCGGGCGATGACAC
CACCGATGAAGATGCCATGAGAGTGCTTCGAGGCTTGGGTCGCTCGTTTA
GAATTTCTGCTGATGCCCAGATTCAAACTTATGCGGATTTCCGGTTGCCC
AAGCAGGCTGTAATGACCGATCTTCTCAAATGGATAGCCAATGTGTATGT
TTCTTAGAAGCTTTCTAGACCAT
BS20392.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:37:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5171-RD | 891 | CG5171-PD | 1..891 | 17..907 | 4455 | 100 | Plus |
| CG5171-RF | 822 | CG5171-PF | 1..822 | 86..907 | 4110 | 100 | Plus |
| CG5171-RE | 822 | CG5171-PE | 1..822 | 86..907 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5171-RD | 1156 | CG5171-RD | 104..995 | 17..908 | 4460 | 100 | Plus |
| CG5171-RF | 1182 | CG7-RF | 131..1021 | 18..908 | 4455 | 100 | Plus |
| CG5171-RE | 1137 | CG5171-RE | 86..976 | 18..908 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7403541..7404166 | 150..775 | 3130 | 100 | Plus |
| 2L | 23513712 | 2L | 7403229..7403364 | 18..153 | 680 | 100 | Plus |
| 2L | 23513712 | 2L | 7404230..7404365 | 773..908 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:37:10 has no hits.
BS20392.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:26 Download gff for
BS20392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5171-RD | 104..994 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:29 Download gff for
BS20392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5171-RD | 104..994 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:36 Download gff for
BS20392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5171-RD | 104..994 | 17..907 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:36 Download gff for
BS20392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7404230..7404364 | 773..907 | 100 | | Plus |
| 2L | 7403227..7403361 | 17..150 | 99 | -> | Plus |
| 2L | 7403542..7404163 | 151..772 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:29 Download gff for
BS20392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7403227..7403361 | 17..150 | 99 | -> | Plus |
| arm_2L | 7403542..7404163 | 151..772 | 100 | -> | Plus |
| arm_2L | 7404230..7404364 | 773..907 | 100 | | Plus |
BS20392.pep Sequence
Translation from 16 to 906
> BS20392.pep
MKSIVFLLALLLNATRSYREIVKMPEKQVAPVISNLEDFANNLPGYLISE
SPVAVLLDYDGTLAPIADNPAKTKMPVELEAILHKIAKHPKVFLAVISGR
GLKDVQKQVNIDGITYAGNHGLEIEYPDGSRHDYELPTEIQKNYTQMVRE
LKEKVEKNGAWVEDKKVSLTYHYRDTPAALKDQQKQLASEICTKFGFRAN
QAHEAIEAKPPVNWNKGEAAVYILKQKFGDNWSQKVSVVFAGDDTTDEDA
MRVLRGLGRSFRISADAQIQTYADFRLPKQAVMTDLLKWIANVYVS*
BS20392.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5171-PD | 296 | CG5171-PD | 1..296 | 1..296 | 1523 | 100 | Plus |
| CG5171-PF | 273 | CG5171-PF | 1..273 | 24..296 | 1417 | 100 | Plus |
| CG5171-PE | 273 | CG5171-PE | 1..273 | 24..296 | 1417 | 100 | Plus |
| CG5171-PA | 273 | CG5171-PA | 1..273 | 24..296 | 1417 | 100 | Plus |
| CG5171-PB | 273 | CG5171-PB | 1..273 | 24..296 | 1417 | 100 | Plus |
