BS20395.complete Sequence
1769 bp assembled on 2011-01-28
GenBank Submission: KX805201
> BS20395.complete
GAAGTTATCAGTCGACATGGCCTCATTCCAAATACCTGTTATCAACCTGG
AGGTGCGCGAGGTCAAGGACATCGTGTGGGAGAAGATCCAGGAGCCGGTG
AACCAGCGACGCCTCATCCTCGTGATTGTATCGATAGCCCTGCTGCTGGA
CAACATGCTGTATATGGTGATAGTACCGATTATACCCGACTATTTAAGAG
AGATTGGCAGCTTCGATGACGGGCCGACGCCTCCACCGTTGAGGGATAAT
ATCACGGGAAAGATCATACCCGTGCATCATGATCATCACGGGCAGGACTC
GGCCACGGGCATCCTATTCGCCTCGAAGGCCATCGTCCAGCTGATGGTGA
ATCCGTTTTCGGGCGGCCTCATCGACAAGATCGGCTACGATTTGCCCATG
ATGATCGGCCTGACCATCATGTTCTTCTCGACGGCAGTCTTTGCTTGTGG
CAGCAGCTACAGTGTCCTGTTCTTCGCCCGATCCCTGCAGGGAGCCGGTT
CCGCCTTTGCGGACACCGCCGGTTTGGCCATGATAGCCGATCGGTTCACC
GAGGAGAACGAACGTTCGCAGGCCCTTGGCATTGCGTTGGCCTTCATCAG
TTTCGGATGCCTGGTGGCGCCTCCGTTTGGCGGAGCGCTCTACCAGTTCG
CCGGAAAGGAAGTGCCCTTTCTGATCCTGGCACTGGTGTGCCTACTGGAC
GGGCTGATGCTGCTGCTGGTGATGAAACCGGTCAAGGAGGCGATGAAGCA
AAGCAAGGATGTGCAGGACCAAGTAATACCCATCTGGCGCCTGCTGATGG
ATCCCTATATTGCAGTCTGTGCCGGGGCACTGACCATGTCCAATGTGGCG
CTGGCCTTTCTGGAGCCAACCATTTCGCTGTGGATGGAGGATAACATGAC
CACTGACAACTGGAAGATCGGCATGGTCTGGCTGCCCGCCTTCTTCCCAC
ACGTGCTGGGCGTGGTCATTACGGTGAAGATGGCCCGCAAGTATCCGCAG
CACCAGTGGCTAATGGCTGCCGGTGGATTGGCCCTGGAGGGCTTCTCCTG
CTTCATCATACCATTCTGCAGCGGCTACAAGATGCTCATGCTGCCCATCT
GTGTGATCTGCTTCGGAATTGCCCTAATAGACACGGCTCTACTACCCACA
CTCGGTTATCTGGTGGACGTGCGATATGTGTCGGTGTACGGTAGTATCTA
TGCCATAGCAGATATATCCTACTCGATCGCCTATGCCGTAGGGCCCATTA
TCGCCGGCGGAGTGGTGGAGGCCATTGGGTTTACGGCTCTCAACTTTTTG
ATAGCCTTCTCGAATCTGGCCTATGTGCCCGTGCTGCGAAAGCTGCGCAA
CATCTACGACTTCAAGCCGTTCGAGAATGAGGCCAACATCCTGATGCAGG
ACCCGCCCAACAAAGAGTACCAGACCTATGTGATGCACGACCAGAAACCC
GTCGAGGGTGGCGTCAAGAATCATCTGGAGTACGGCCAGCAGTATCAGCA
GGAGCAGGAGACGAATCTGGATGACCAGCAGTACGAGTACCAGCAGCAGC
AGCAGGGATACCAGCAAGGATATCAGCAGGATCAGGGCTACCAGCCGGGC
TATCAGGAGCAGGGCGGCAGCTACGCCCCGCAAGGTCAGCCCCGTGTGGC
CAATCCCTTCCAGCAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGG
TCCAGAGCAGAGGTCCTGCCGCCCCAGCGAATCCCTTTAGGCAAGGATTT
TAAAAGCTTTCTAGACCAT
BS20395.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VAChT-RA | 1737 | CG32848-PA | 1..1737 | 17..1753 | 8685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VAChT-RA | 7098 | CG32848-RA | 992..2729 | 17..1754 | 8690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:31:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18712810..18714547 | 17..1754 | 8690 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6826 | 724..668 | 114 | 66.7 | Minus |
BS20395.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:58 Download gff for
BS20395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VAChT-RA | 1041..2775 | 17..1751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:58 Download gff for
BS20395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VAChT-RA | 1041..2775 | 17..1751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:06 Download gff for
BS20395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VAChT-RA | 992..2726 | 17..1751 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:06 Download gff for
BS20395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18712810..18714544 | 17..1751 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:58 Download gff for
BS20395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14538532..14540266 | 17..1751 | 100 | | Plus |
BS20395.pep Sequence
Translation from 16 to 1752
> BS20395.pep
MASFQIPVINLEVREVKDIVWEKIQEPVNQRRLILVIVSIALLLDNMLYM
VIVPIIPDYLREIGSFDDGPTPPPLRDNITGKIIPVHHDHHGQDSATGIL
FASKAIVQLMVNPFSGGLIDKIGYDLPMMIGLTIMFFSTAVFACGSSYSV
LFFARSLQGAGSAFADTAGLAMIADRFTEENERSQALGIALAFISFGCLV
APPFGGALYQFAGKEVPFLILALVCLLDGLMLLLVMKPVKEAMKQSKDVQ
DQVIPIWRLLMDPYIAVCAGALTMSNVALAFLEPTISLWMEDNMTTDNWK
IGMVWLPAFFPHVLGVVITVKMARKYPQHQWLMAAGGLALEGFSCFIIPF
CSGYKMLMLPICVICFGIALIDTALLPTLGYLVDVRYVSVYGSIYAIADI
SYSIAYAVGPIIAGGVVEAIGFTALNFLIAFSNLAYVPVLRKLRNIYDFK
PFENEANILMQDPPNKEYQTYVMHDQKPVEGGVKNHLEYGQQYQQEQETN
LDDQQYEYQQQQQGYQQGYQQDQGYQPGYQEQGGSYAPQGQPRVANPFQQ
QQQQQQQQQQQVQSRGPAAPANPFRQGF*
BS20395.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:54:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VAChT-PA | 578 | CG32848-PA | 1..578 | 1..578 | 3012 | 100 | Plus |
| Vmat-PC | 610 | CG33528-PC | 139..608 | 32..476 | 857 | 38.7 | Plus |
| Vmat-PE | 610 | CG33528-PE | 139..608 | 32..476 | 857 | 38.7 | Plus |
| Vmat-PF | 610 | CG33528-PF | 139..608 | 32..476 | 857 | 38.7 | Plus |
| Vmat-PD | 646 | CG33528-PD | 139..579 | 32..445 | 852 | 40 | Plus |
