BS20406.complete Sequence
1676 bp assembled on 2011-01-07
GenBank Submission: KX803092
> BS20406.complete
GAAGTTATCAGTCGACATGCATCGTCGTTGTATAATCTGTGGCCAGGAGC
CGGGCGAGCAGTGCGTCTACCCGCGCAACATGTCGGAGGCTCGCCGGTGG
CAGAACTTGGCCAACCTCAGCAGTTTTGACGTCGACCCCGAATCGCTATG
CCGGCACGGATGCGTTTGCGCCTCCCATTTGGATGGCCACGGATCAGGTT
CGGAATCGGAGAGCTCGTCTCGTGCTGCTGGCAGGGCAAGGACTCAAGCT
GGCCTGCAGGAATGGAGCAGGTGGAGCTCTTCGGCATCGGACGCTGGCCA
TGGCTATTCCATCAGCAAAAAGACTAACGAGCGGATCCAGAACCAAAGCA
AACAGAGTCTCGGCTCGGAGAGGCAGGAATTCAGCAGCGCGAACAGATGT
ACGAATGGTTGCTGTCGTTTTCGAAACACCTGCAACAGCATGTTCCAGGG
CAATACATACACCCAAATGGGACAGAAGTATCCCAATCCACAAACAAGGG
CCACAAACTTAGAGAACAAAAATAATCCACCTATGAAATTAAGCCCAAGG
GTAAATAAACCGACCTTTGGAGCTGTAAACTGCACCTGTGATGGATGCAC
CTGTAGTTTCTGTCCAGTGCAAGGGATCAAAAAAGCGGTAGCCCCTCTAG
AAGAGGATTCAGGCAGCCAACAAAGTATAAATAAAGAGTATAAAGAAAGA
AAGGATAATTCCAAAGGCAGCCCAAAAAAACAGAGTTCCTGTGAACGTCT
CACTTGTCCAGCTTTCAGGACAACGGACATAAAAACTGTAGCAGATGATT
TCCGCAGTAGCCCGAACTACCCGGTATCGCCCACTTCACGAGGTAACAAC
AAAATTAAAAGTTCGATGAACCAGCAGAATACGAAGAAAAAGCCGGAGCT
GAAGAGCGAATGCTGCCAGACGTGCATCACCCAGCAATTGAAGGATCAGG
AAGTGCAGTGCTCAACGGTGACGCTGCAGACTCAGAGCTCTTCGCCTGTT
AGGCGAACCAAGATGACCGGCTCGTTCAGCCATCAAACTGGAAGCTCAGC
GACAGGTTTATCTGGCGGATACACCAATAATTCGAATAACTTTACTTGTG
GCGGCGGCGAGAGAAGAACTTCAAATGCAATCAACGTGCTGCTTATGAAC
GGCACCCGGAATAATGACTATGAAGATGGGTGCTGCTCTCCGGCGAAGCA
ACGTCCCATGGCGCCGCCTCCAGAGATTTGCGTTCAAGAGTCCGATCTGA
CCGAAAATGATGAGCGAGCTGTGTTCCCGGAAATCGACAAGCCCAATTAC
AGAGTTTGTCGATCCTCGAACGAGACCAATGTTCTGGTCCTGGAGGAGAG
TCCTTTGAATGATTGCAGCCCCAACCCAGGGCAGGATGCGAGTACACTAG
ATAGCAAGACGAAGAGTAATTTTGATGCTCAACAAAACGCCAACGATAAT
AAAGAGCAACATAATAGTTTTCTAATCAACTGGCTTGAGTCCCCGGCCAC
GAGTAACTTCACCAAGGTTCTGGAACTGCAGAGATCTCGCATCAAGGAGC
TGGAGAATCTGCTGGAGCAGCACAGCCTTCTGCAGCAGACAATCCAGCAC
AAGGTTGCGGAGCTGCAGTGCACAGATATACCGGATCCTAAAAATATATC
TAAATCATAAAAGCTTTCTAGACCAT
BS20406.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14864-RA | 1644 | CG14864-PA | 1..1644 | 17..1660 | 8205 | 99.9 | Plus |
| CG14864-RB | 1581 | CG14864-PB | 1..1581 | 80..1660 | 7890 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:18:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14864-RA | 1746 | CG14864-RA | 58..1702 | 17..1661 | 8210 | 99.9 | Plus |
| CG14864-RB | 1727 | CG14864-RB | 67..1683 | 45..1661 | 8070 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15266728..15268372 | 1661..17 | 8210 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:18:48 has no hits.
BS20406.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:19 Download gff for
BS20406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14864-RA | 58..1699 | 17..1658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:36 Download gff for
BS20406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14864-RA | 58..1699 | 17..1658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:43 Download gff for
BS20406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14864-RA | 58..1699 | 17..1658 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:43 Download gff for
BS20406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15266731..15268372 | 17..1658 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:36 Download gff for
BS20406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11092453..11094094 | 17..1658 | 99 | | Minus |
BS20406.pep Sequence
Translation from 16 to 1659
> BS20406.pep
MHRRCIICGQEPGEQCVYPRNMSEARRWQNLANLSSFDVDPESLCRHGCV
CASHLDGHGSGSESESSSRAAGRARTQAGLQEWSRWSSSASDAGHGYSIS
KKTNERIQNQSKQSLGSERQEFSSANRCTNGCCRFRNTCNSMFQGNTYTQ
MGQKYPNPQTRATNLENKNNPPMKLSPRVNKPTFGAVNCTCDGCTCSFCP
VQGIKKAVAPLEEDSGSQQSINKEYKERKDNSKGSPKKQSSCERLTCPAF
RTTDIKTVADDFRSSPNYPVSPTSRGNNKIKSSMNQQNTKKKPELKSECC
QTCITQQLKDQEVQCSTVTLQTQSSSPVRRTKMTGSFSHQTGSSATGLSG
GYTNNSNNFTCGGGERRTSNAINVLLMNGTRNNDYEDGCCSPAKQRPMAP
PPEICVQESDLTENDERAVFPEIDKPNYRVCRSSNETNVLVLEESPLNDC
SPNPGQDASTLDSKTKSNFDAQQNANDNKEQHNSFLINWLESPATSNFTK
VLELQRSRIKELENLLEQHSLLQQTIQHKVAELQCTDIPDPKNISKS*
BS20406.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14864-PA | 547 | CG14864-PA | 1..547 | 1..547 | 2933 | 100 | Plus |
| CG14864-PB | 526 | CG14864-PB | 1..526 | 22..547 | 2807 | 100 | Plus |
