BS20414.complete Sequence
1625 bp assembled on 2011-01-07
GenBank Submission: KX805543
> BS20414.complete
GAAGTTATCAGTCGACATGGTTCTTCGGGTGGAAAAATTTCTACTGCTAG
CGATAGCTATTGGCGCCGTAATGGGCAGCTCCCAGGGAGCTAATATTCTA
GGACTCTTCCCGAGCCTGAGTCCCTCGCACTTGATCATCCAAATGTCCGC
GGCCAAAGTTCTGGCCGAGAATGGGCACAATGTGACGGTGGTCACCGTGC
TGAAGCCAGTGGTTAACCATAAAAACATAACCGTGATCCAAGTGCCGCTT
AGTAAGGAAGAAGCCCAGCAAATGAGCGATACGATTGGAGCGATGTCCAA
GAACGACAATAGCAACATGGCCTTATCCCTGCTCCGGATGTCGGATCAAA
TGGATTTCATGATCAGAAAGAATGCCGAGACCCTGATGAACGATCGAGTG
AGGGATCTGTACCTGAACCGTGGAAACAAGTTCGACCTGGTTATTTCTGG
ATACTTTATGAACGATTTCCAGCTCGGATTCGCAAGGAAAGTCAACGCAC
CCGTCATCGTATTGGCCACAATGCCTCCCAATCATCTATTGAACCCCCTG
ATCGGTAATCCCCTGGAGGTTTCCTATGCCGGAATCAGTAATCCTGCAGA
GGGCAGTAAAGCCGTAACCTTCCAACGGCGTTTATCCAGCTATATGCAAA
GCCTCGGTTTCGGTGTCTTTTCTCATCTTTCCGAGCGGCGTAATCGAAAT
TGGTACAAGGAAGTTTATGGCAACGATCCCAAAATGCCTGAGTACTCGGA
AATGCTCAAGAACACATCGTTGGTTTTCTTCAGTTCGCACGCGGCCAGTG
AAGGACCTATTAGACCTAATGTTCCTTCTGCCATAGAAATCGGTGGAATT
CAGATTAAGGACAAGCCGGATCCCCTTCCCCAAAACATTGCGGAGTTTTT
GGGCAATGCTACAGATGGAGCTATTCTCCTCTCCCTGGGTTCTAATGTCC
AGGGAAAGCATCTAAACCCAGACACAGTTGCCAAGATGTTCAACGTCCTT
TCAAAACTGAAAGAAAGGGTGATTTGGAAGTGGGAGGACCAAGAGAATAC
GCCAGGGAAATCAGCTAATATTCTTTACTCGAAGTGGCTTCCGCAGGACG
ATATTCTGGCCCACCCAAACATCAAGCTATTCATCAACCACGCCGGAAAA
GGTGGCATTACTGAGTCCCAGTACCATGGAAAGCCCATGCTTTCGCTGCC
AGTCTTTGCTGACCAGCCACGTAACGCAAATGCCATGGTCAAAAGCGGTT
TTGGCCTCACTCTGAGCCTGCTCACTTTGGAGGAGAAGCCGTTTCAAGAG
GCCATCCTGGAGATCTTGTCTAATCCGCAGTATGCAGAAAGGGTGAAGTC
CTTTTCAACTCTCTACCGCGATCGCCCGATGACCGCTAGGGAATCATTCC
TCTACTGGACGGAGTACGTCATCCGGCACCATGGAGCTGCCCATCTTCAG
AGTCCTCTGGTGCACATGAGCTTCATAGCCGCCAATAATATCGATATTTG
TTTCCTAATATTTGTCATACTAGTTTCAGTTTTGGTACTTATTAAATTTC
TGGTTCAGTTTATTTATAGAAGATTCATCTCGAAGCCAAAGAAGGAGAAA
ACCCATTAAAAGCTTTCTAGACCAT
BS20414.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:19:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5999-RB | 1593 | CG5999-PB | 1..1593 | 17..1609 | 7965 | 100 | Plus |
| CG5724-RA | 1593 | CG5724-PA | 687..1481 | 703..1497 | 1575 | 79.9 | Plus |
| Ugt37a1-RA | 1443 | CG11012-PA | 562..1322 | 728..1488 | 985 | 75.3 | Plus |
| CG5724-RA | 1593 | CG5724-PA | 73..559 | 92..578 | 950 | 79.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:19:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5999-RB | 1667 | CG5999-RB | 1..1599 | 13..1611 | 7980 | 99.9 | Plus |
| CG5724-RA | 1710 | CG5724-RA | 707..1501 | 703..1497 | 1575 | 79.9 | Plus |
| Ugt37a1-RA | 1623 | CG11012-RA | 678..1438 | 728..1488 | 985 | 75.3 | Plus |
| CG5724-RA | 1710 | CG5724-RA | 93..579 | 92..578 | 950 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:19:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12742026..12742928 | 1611..709 | 4515 | 100 | Minus |
| 3R | 32079331 | 3R | 12742979..12743680 | 714..13 | 3480 | 99.7 | Minus |
| 3R | 32079331 | 3R | 12740436..12741208 | 725..1497 | 1570 | 80.2 | Plus |
| 2L | 23513712 | 2L | 20372594..20373354 | 1488..728 | 985 | 75.3 | Minus |
| 3R | 32079331 | 3R | 12739734..12740220 | 92..578 | 950 | 79.7 | Plus |
| 2L | 23513712 | 2L | 16800909..16801109 | 1018..1218 | 315 | 77.1 | Plus |
| 2L | 23513712 | 2L | 6226126..6226326 | 1018..1218 | 255 | 75.1 | Plus |
| 2L | 23513712 | 2L | 16795184..16795369 | 995..1180 | 225 | 74.7 | Plus |
| 2L | 23513712 | 2L | 6225134..6225239 | 81..186 | 215 | 80.2 | Plus |
| 2L | 23513712 | 2L | 20373902..20374018 | 208..92 | 210 | 78.6 | Minus |
| 2L | 23513712 | 2L | 16801252..16801380 | 1361..1489 | 195 | 76.7 | Plus |
| 2L | 23513712 | 2L | 16794288..16794414 | 81..207 | 185 | 76.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:19:01 has no hits.
BS20414.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:20 Download gff for
BS20414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5999-RB | 5..1595 | 17..1607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:38 Download gff for
BS20414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5999-RB | 5..1595 | 17..1607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:46 Download gff for
BS20414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5999-RB | 5..1595 | 17..1607 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:46 Download gff for
BS20414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12742030..12742928 | 709..1607 | 100 | <- | Minus |
| 3R | 12742985..12743676 | 17..708 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:38 Download gff for
BS20414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8567752..8568650 | 709..1607 | 100 | <- | Minus |
| arm_3R | 8568707..8569398 | 17..708 | 100 | | Minus |
BS20414.pep Sequence
Translation from 16 to 1608
> BS20414.pep
MVLRVEKFLLLAIAIGAVMGSSQGANILGLFPSLSPSHLIIQMSAAKVLA
ENGHNVTVVTVLKPVVNHKNITVIQVPLSKEEAQQMSDTIGAMSKNDNSN
MALSLLRMSDQMDFMIRKNAETLMNDRVRDLYLNRGNKFDLVISGYFMND
FQLGFARKVNAPVIVLATMPPNHLLNPLIGNPLEVSYAGISNPAEGSKAV
TFQRRLSSYMQSLGFGVFSHLSERRNRNWYKEVYGNDPKMPEYSEMLKNT
SLVFFSSHAASEGPIRPNVPSAIEIGGIQIKDKPDPLPQNIAEFLGNATD
GAILLSLGSNVQGKHLNPDTVAKMFNVLSKLKERVIWKWEDQENTPGKSA
NILYSKWLPQDDILAHPNIKLFINHAGKGGITESQYHGKPMLSLPVFADQ
PRNANAMVKSGFGLTLSLLTLEEKPFQEAILEILSNPQYAERVKSFSTLY
RDRPMTARESFLYWTEYVIRHHGAAHLQSPLVHMSFIAANNIDICFLIFV
ILVSVLVLIKFLVQFIYRRFISKPKKEKTH*
BS20414.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:49:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5999-PB | 530 | CG5999-PB | 1..530 | 1..530 | 2715 | 100 | Plus |
| CG5724-PA | 530 | CG5724-PA | 1..530 | 1..530 | 2095 | 75.7 | Plus |
| Ugt37a1-PA | 480 | CG11012-PA | 1..478 | 43..528 | 1739 | 67.5 | Plus |
| Ugt37b1-PA | 537 | CG9481-PA | 8..527 | 11..530 | 1470 | 53.7 | Plus |
| Ugt36Bc-PC | 543 | CG17932-PC | 17..533 | 9..526 | 1361 | 49 | Plus |
