BS20483.complete Sequence
434 bp assembled on 2011-01-07
GenBank Submission: KX805088
> BS20483.complete
GAAGTTATCAGTCGACATGTGCATCAATTGGCATCCAATATTTATTTTTG
CTTGTTTAAGTCAGTTGGGCGCAGCCCAAGAACCTTTAATTTTCGAAACA
TCTCGTAGCCCATGGAACAATGCCGCCGCAACGACGTCAATACCAATTTC
GCCCACCAGCGCAAACTTAGTTTTGGTTAACAATGTAAGAATACCAGGAG
GTCTTACACCATTTGTACCAGCACCGGCCCCAACCAAGGAATTTCTGAAC
TGCTTTGGTAACTGTCCCACCACATCGCAATACAATCCCATTTGCGGCAG
CAATATGCAGCTTTATATGAACGAGGAAAAATTTAATTGTGCTCGTTTCT
GTGGAGCTGACATTCAAATAGTTCGAAGAGGTTCTTGTGAGGGTCTTTTT
GCGATGACGCGAGGTTGAAAGCTTTCTAGACCAT
BS20483.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:19:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34454-RA | 402 | CG34454-PA | 1..402 | 17..418 | 2010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:19:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34454-RA | 603 | CG34454-RA | 49..450 | 17..418 | 2010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 231960..232302 | 359..17 | 1715 | 100 | Minus |
3L | 28110227 | 3L | 231834..231893 | 418..359 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:19:35 has no hits.
BS20483.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:22 Download gff for
BS20483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34454-RA | 49..449 | 17..417 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:43 Download gff for
BS20483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34454-RA | 49..449 | 17..417 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:56 Download gff for
BS20483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34454-RA | 49..449 | 17..417 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:56 Download gff for
BS20483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 231835..231892 | 360..417 | 100 | <- | Minus |
3L | 231960..232302 | 17..359 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:43 Download gff for
BS20483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 231835..231892 | 360..417 | 100 | <- | Minus |
arm_3L | 231960..232302 | 17..359 | 100 | | Minus |
BS20483.pep Sequence
Translation from 16 to 417
> BS20483.pep
MCINWHPIFIFACLSQLGAAQEPLIFETSRSPWNNAAATTSIPISPTSAN
LVLVNNVRIPGGLTPFVPAPAPTKEFLNCFGNCPTTSQYNPICGSNMQLY
MNEEKFNCARFCGADIQIVRRGSCEGLFAMTRG*
BS20483.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:49:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34454-PA | 133 | CG34454-PA | 1..133 | 1..133 | 726 | 100 | Plus |
Kaz1-ORFB-PF | 114 | CG1220-PF | 1..113 | 3..125 | 194 | 38.9 | Plus |
Kaz1-ORFB-PE | 114 | CG1220-PE | 1..113 | 3..125 | 194 | 38.9 | Plus |
Kaz1-ORFB-PA | 114 | CG1220-PA | 1..113 | 3..125 | 194 | 38.9 | Plus |
Kaz1-ORFB-PH | 115 | CG1220-PH | 1..101 | 3..113 | 171 | 39.5 | Plus |