Clone BS20483 Report

Search the DGRC for BS20483

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:204
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG34454-RA
Protein status:BS20483.pep: gold
Sequenced Size:434

Clone Sequence Records

BS20483.complete Sequence

434 bp assembled on 2011-01-07

GenBank Submission: KX805088

> BS20483.complete
GAAGTTATCAGTCGACATGTGCATCAATTGGCATCCAATATTTATTTTTG
CTTGTTTAAGTCAGTTGGGCGCAGCCCAAGAACCTTTAATTTTCGAAACA
TCTCGTAGCCCATGGAACAATGCCGCCGCAACGACGTCAATACCAATTTC
GCCCACCAGCGCAAACTTAGTTTTGGTTAACAATGTAAGAATACCAGGAG
GTCTTACACCATTTGTACCAGCACCGGCCCCAACCAAGGAATTTCTGAAC
TGCTTTGGTAACTGTCCCACCACATCGCAATACAATCCCATTTGCGGCAG
CAATATGCAGCTTTATATGAACGAGGAAAAATTTAATTGTGCTCGTTTCT
GTGGAGCTGACATTCAAATAGTTCGAAGAGGTTCTTGTGAGGGTCTTTTT
GCGATGACGCGAGGTTGAAAGCTTTCTAGACCAT

BS20483.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG34454-RA 402 CG34454-PA 1..402 17..418 2010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG34454-RA 603 CG34454-RA 49..450 17..418 2010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 231960..232302 359..17 1715 100 Minus
3L 28110227 3L 231834..231893 418..359 300 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:19:35 has no hits.

BS20483.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:22 Download gff for BS20483.complete
Subject Subject Range Query Range Percent Splice Strand
CG34454-RA 49..449 17..417 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:43 Download gff for BS20483.complete
Subject Subject Range Query Range Percent Splice Strand
CG34454-RA 49..449 17..417 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:56 Download gff for BS20483.complete
Subject Subject Range Query Range Percent Splice Strand
CG34454-RA 49..449 17..417 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:56 Download gff for BS20483.complete
Subject Subject Range Query Range Percent Splice Strand
3L 231835..231892 360..417 100 <- Minus
3L 231960..232302 17..359 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:43 Download gff for BS20483.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 231835..231892 360..417 100 <- Minus
arm_3L 231960..232302 17..359 100   Minus

BS20483.pep Sequence

Translation from 16 to 417

> BS20483.pep
MCINWHPIFIFACLSQLGAAQEPLIFETSRSPWNNAAATTSIPISPTSAN
LVLVNNVRIPGGLTPFVPAPAPTKEFLNCFGNCPTTSQYNPICGSNMQLY
MNEEKFNCARFCGADIQIVRRGSCEGLFAMTRG*

BS20483.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG34454-PA 133 CG34454-PA 1..133 1..133 726 100 Plus
Kaz1-ORFB-PF 114 CG1220-PF 1..113 3..125 194 38.9 Plus
Kaz1-ORFB-PE 114 CG1220-PE 1..113 3..125 194 38.9 Plus
Kaz1-ORFB-PA 114 CG1220-PA 1..113 3..125 194 38.9 Plus
Kaz1-ORFB-PH 115 CG1220-PH 1..101 3..113 171 39.5 Plus