BS20486.complete Sequence
1667 bp assembled on 2011-01-07
GenBank Submission: KX802051
> BS20486.complete
GAAGTTATCAGTCGACATGAACTACGTGGGACTGGGACTTATCATTGTGC
TGAGCTGCCTTTGGCTCGGTTCGAACGCGAGTGATACAGATGACCCTCTG
TTGGTGCAGCTGCCCCAGGGCAAGCTACGTGGTCGCGATAATGGAAGCTA
CTACAGCTACGAATCGATTCCCTACGCCGAACCGCCCACTGGCGATCTAC
GATTCGAGGCTCCAGAGCCGTACAAACAAAAGTGGTCGGATATATTCGAT
GCCACCAAAACCCCGGTGGCGTGCCTGCAGTGGGATCAGTTCACGCCTGG
GGCCAACAAATTGGTAGGAGAGGAGGATTGCCTAACCGTCAGCGTCTACA
AGCCGAAGAATAGCAAGAGGAATAGCTTTCCGGTGGTGGCCCACATTCAC
GGAGGTGCCTTTATGTTCGGTGCAGCATGGCAAAATGGACACGAGAACGT
GATGCGTGAGGGCAAATTCATTCTGGTGAAGATAAGCTATCGCCTGGGGC
CATTGGGTTTCGTGAGCACCGGCGATAGGGATCTTCCCGGAAACTATGGA
CTGAAAGATCAACGGCTGGCTCTCAAATGGATTAAGCAGAATATAGCCAG
TTTTGGTGGAGAACCGCAGAACGTACTGTTGGTTGGTCACTCCGCTGGAG
GAGCTTCGGTCCATCTGCAGATGCTTCGTGAAGATTTCGGCCAGCTGGCC
AGGGCGGCATTCTCGTTTAGTGGAAATGCTCTAGATCCATGGGTTATACA
GAAGGGAGCAAGAGGACGAGCCTTTGAACTGGGACGCAACGTGGGATGTG
AATCGGCTGAAGACTCGACCAGCCTGAAGAAATGCCTAAAGTCAAAGCCA
GCCAGTGAATTAGTCACCGCCGTCCGTAAATTCCTTATATTTTCCTATGT
GCCCTTTGCTCCATTTAGTCCTGTATTGGAGCCATCGGATGCTCCAGACG
CCATTATCACCCAGGATCCCAGGGATGTCATTAAGAGCGGAAAGTTCGGA
CAGGTTCCGTGGGCTGTTTCCTATGTCACAGAGGATGGTGGCTACAATGC
CGCCTTGCTTTTGAAGGAACGGAAATCTGGAATAGTTATCGATGATCTAA
ACGAGCGTTGGCTTGAGTTGGCACCATATTTACTATTCTACCGGGACACG
AAGACCAAAAAGGATATGGACGACTACTCGCGGAAAATTAAGCAGGAGTA
TATAGGCAATCAGAGATTTGACATCGAAAGCTATTCAGAATTGCAGCGGC
TATTCACGGATATTCTCTTCAAGAATAGCACGCAGGAGTCATTGGATCTT
CATCGCAAATATGGAAAGAGTCCTGCCTACGCTTATGTCTATGACAATCC
AGCCGAAAAAGGAATCGCACAGGTCCTGGCCAATCGAACCGATTATGATT
TTGGAACTGTACACGGTGACGACTACTTTTTGATATTCGAAAATTTCGTA
CGAGATGTGGAAATGCGTCCGGATGAGCAGATAATTTCGAGAAATTTTAT
CAATATGCTGGCAGATTTTGCTTCGAGTGATAATGGCTCTCTAAAATATG
GTGAATGCGATTTCAAAGATAATGTAGGTAGTGAGAAATTCCAATTATTA
GCTATTTATATTGATGGCTGCCAGAATAGGCAGCATGTGGAATTTCCGTA
AAAGCTTTCTAGACCAT
BS20486.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:20:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Est-6-RB | 1635 | CG6917-PB | 1..1635 | 17..1651 | 8175 | 100 | Plus |
| Est-6-RA | 1635 | CG6917-PA | 1..1635 | 17..1651 | 8175 | 100 | Plus |
| Est-P-RA | 1635 | CG17148-PA | 124..992 | 149..1017 | 520 | 70.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Est-6-RB | 1837 | CG6917-RB | 40..1676 | 15..1651 | 8185 | 100 | Plus |
| Est-6-RA | 1712 | CG6917-RA | 40..1676 | 15..1651 | 8185 | 100 | Plus |
| thoc6-RC | 2869 | CG5632-RC | 1836..2704 | 1017..149 | 520 | 70.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:20:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12188857..12190246 | 15..1404 | 6950 | 100 | Plus |
| 3L | 28110227 | 3L | 12190296..12190544 | 1403..1651 | 1245 | 100 | Plus |
| 3L | 28110227 | 3L | 12190861..12191729 | 149..1017 | 520 | 70.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:20:08 has no hits.
BS20486.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:23 Download gff for
BS20486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Est-6-RA | 25..1657 | 17..1649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:49 Download gff for
BS20486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Est-6-RA | 42..1674 | 17..1649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:07 Download gff for
BS20486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Est-6-RA | 42..1674 | 17..1649 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:07 Download gff for
BS20486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12188859..12190245 | 17..1403 | 100 | -> | Plus |
| 3L | 12190297..12190542 | 1404..1649 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:49 Download gff for
BS20486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12181959..12183345 | 17..1403 | 100 | -> | Plus |
| arm_3L | 12183397..12183642 | 1404..1649 | 100 | | Plus |
BS20486.pep Sequence
Translation from 16 to 1650
> BS20486.pep
MNYVGLGLIIVLSCLWLGSNASDTDDPLLVQLPQGKLRGRDNGSYYSYES
IPYAEPPTGDLRFEAPEPYKQKWSDIFDATKTPVACLQWDQFTPGANKLV
GEEDCLTVSVYKPKNSKRNSFPVVAHIHGGAFMFGAAWQNGHENVMREGK
FILVKISYRLGPLGFVSTGDRDLPGNYGLKDQRLALKWIKQNIASFGGEP
QNVLLVGHSAGGASVHLQMLREDFGQLARAAFSFSGNALDPWVIQKGARG
RAFELGRNVGCESAEDSTSLKKCLKSKPASELVTAVRKFLIFSYVPFAPF
SPVLEPSDAPDAIITQDPRDVIKSGKFGQVPWAVSYVTEDGGYNAALLLK
ERKSGIVIDDLNERWLELAPYLLFYRDTKTKKDMDDYSRKIKQEYIGNQR
FDIESYSELQRLFTDILFKNSTQESLDLHRKYGKSPAYAYVYDNPAEKGI
AQVLANRTDYDFGTVHGDDYFLIFENFVRDVEMRPDEQIISRNFINMLAD
FASSDNGSLKYGECDFKDNVGSEKFQLLAIYIDGCQNRQHVEFP*
BS20486.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Est-6-PB | 544 | CG6917-PB | 1..544 | 1..544 | 2879 | 100 | Plus |
| Est-6-PA | 544 | CG6917-PA | 1..544 | 1..544 | 2879 | 100 | Plus |
| Est-P-PA | 544 | CG17148-PA | 7..544 | 9..544 | 1838 | 62.2 | Plus |
| Jhedup-PA | 559 | CG8424-PA | 37..506 | 39..504 | 609 | 31.8 | Plus |
| clt-PA | 562 | CG9858-PA | 22..497 | 30..502 | 567 | 32.5 | Plus |
