Clone BS20494 Report

Search the DGRC for BS20494

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:204
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptGstE12-RA
Protein status:BS20494.pep: full length peptide match
Sequenced Size:755

Clone Sequence Records

BS20494.complete Sequence

755 bp assembled on 2011-01-07

GenBank Submission: KX803846

> BS20494.complete
GAAGTTATCAGTCGACATGCTATCGCTGCTAGACCAGCCGTCCGCATCGC
GAGGGTGGGATTCAACCATGTCAAAGCCAGCTCTGTATTATGCCACCCTA
AGTCCCCCATCGCGCGCCGTCCTCCTCACGGCTAAGGCGATCGGACTCGA
CCTTGAACTACGGCCAATTAACCTGCTGAAGGGAGAGCATCTGACTCCGG
AATTCCTCAAGCTGAACCCCCAGCACACCATCCCGACCCTGATCGACGGC
GAGGCCACTATCATTGACTCGCACGCCATCTGCGCCTACCTGGTGGAGAA
GTATGGCCAGAAGGAGCAGCAGCTCTATCCGAAGGAATTGGTGCAGCGCG
CCAACGTGGATGCTCGGCTCCATCTGGACTCCGGCCACCTCTTCGCGCGC
CTGCGCTTCCTTTACGAGCCCATCCTGTATTATGGATCGACGGACTGCTC
CATCGACAAGATCGCATACATCCAGAAGTGCTGGGAGATCCTAGAGGGAT
TCCTCAAGGATCAGCCGTATTTGTGTGGTTCTGATCTAACCATCGCAGAC
TTTTGCGCCGTGGCCACCGTAACCTCGGTGAACGACACCGCTCCCATCGA
TGAATTTAAGTTTCCCAAGATGCACGCCTGGCTGAAGCGTCTGGCAGAGC
TACCCTACTACCAGGAGGTAAACGGCGACGGCGCTGACGAGCTTAAGAGC
ATCTTCAAGGCCAAGCTGGCAGAAAACCGTGGCAAGTAGAAGCTTTCTAG
ACCAT

BS20494.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
GstE12-RC 672 CG16936-PC 1..672 68..739 3360 100 Plus
GstE12-RB 672 CG16936-PB 1..672 68..739 3360 100 Plus
GstE12-RD 672 CG16936-PD 1..672 68..739 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
GstE12-RC 1311 CG16936-RC 492..1214 17..739 3615 100 Plus
GstE12-RD 907 CG16936-RD 130..810 59..739 3405 100 Plus
GstE12-RB 1022 CG16936-RB 220..899 60..739 3400 100 Plus
GstE12-RD 907 CG16936-RD 27..69 17..59 215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24766841..24767418 739..162 2890 100 Minus
2R 25286936 2R 24767474..24767578 163..59 525 100 Minus
2R 25286936 2R 24767639..24767681 59..17 215 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:19:41 has no hits.

BS20494.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:22 Download gff for BS20494.complete
Subject Subject Range Query Range Percent Splice Strand
CG16936-RA 78..757 60..739 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:45 Download gff for BS20494.complete
Subject Subject Range Query Range Percent Splice Strand
GstE12-RC 494..1216 17..739 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:58 Download gff for BS20494.complete
Subject Subject Range Query Range Percent Splice Strand
GstE12-RC 492..1214 17..739 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:58 Download gff for BS20494.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24767639..24767681 17..59 100   Minus
2R 24766841..24767417 163..739 100 <- Minus
2R 24767475..24767577 60..162 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:45 Download gff for BS20494.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20654364..20654940 163..739 100 <- Minus
arm_2R 20654998..20655100 60..162 100 <- Minus
arm_2R 20655162..20655204 17..59 100   Minus

BS20494.pep Sequence

Translation from 16 to 738

> BS20494.pep
MLSLLDQPSASRGWDSTMSKPALYYATLSPPSRAVLLTAKAIGLDLELRP
INLLKGEHLTPEFLKLNPQHTIPTLIDGEATIIDSHAICAYLVEKYGQKE
QQLYPKELVQRANVDARLHLDSGHLFARLRFLYEPILYYGSTDCSIDKIA
YIQKCWEILEGFLKDQPYLCGSDLTIADFCAVATVTSVNDTAPIDEFKFP
KMHAWLKRLAELPYYQEVNGDGADELKSIFKAKLAENRGK*

BS20494.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
GstE12-PC 223 CG16936-PC 1..223 18..240 1169 100 Plus
GstE12-PB 223 CG16936-PB 1..223 18..240 1169 100 Plus
GstE12-PD 223 CG16936-PD 1..223 18..240 1169 100 Plus
GstE12-PA 223 CG16936-PA 1..223 18..240 1169 100 Plus
GstE11-PB 225 CG5224-PB 3..225 19..240 566 49.3 Plus