BS20501.complete Sequence
497 bp assembled on 2011-01-11
GenBank Submission: KX803148
> BS20501.complete
GAAGTTATCAGTCGACATGGCTGATCAGCAAACCGAACGCTCGTTCCGCA
AGCAACACGCGGTGGTCGTTGTGCGTCGCAAGAGCCCCAACTTGAAGAAA
AGGCCCCGTTTCTATCGCCAAATTGGCCTGGGCTTCCGCGCTCCGGCGGA
GGCCATCGATGGTACCTACATCGACAAGAAGTGCCCCTGGACCGGTGATG
TGAGGATCCGTGGTCGCATTCTGACCGGCGTGGTCCGCAAGGCCAAGATG
CAGCGCACCATTGTCATTCGGCGCGACTACCTGCACTTTGTGCGCAAATA
CAGCCGTTTCGAGAAGCGTCACCGCAACATGAGCGTCCACTGCTCCCCTG
TGTTCAGAGATGTTGAGCATGGCGATATTGTCACCATTGGTGAGTGCCGT
CCTCTGTCCAAGACTGTGCGCTTCAACGTCCTGAAAGTCAGCAAGGGTCA
GGGAGCCAAGAAGAGCTTCAAGAAGTACTAGAAGCTTTCTAGACCAT
BS20501.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS11-RB | 465 | CG8857-PB | 1..465 | 17..481 | 2325 | 100 | Plus |
| RpS11-RC | 468 | CG8857-PC | 136..468 | 149..481 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS11-RB | 569 | CG8857-RB | 28..495 | 15..482 | 2340 | 100 | Plus |
| RpS11-RC | 738 | CG8857-RC | 165..498 | 149..482 | 1670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12199834..12200041 | 357..150 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 12199465..12199592 | 482..355 | 640 | 100 | Minus |
| 2R | 25286936 | 2R | 12200427..12200553 | 152..26 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:51:52 has no hits.
BS20501.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:13 Download gff for
BS20501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS11-RB | 43..507 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:37 Download gff for
BS20501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS11-RB | 30..494 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:39 Download gff for
BS20501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS11-RB | 30..494 | 17..481 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:39 Download gff for
BS20501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12200428..12200555 | 22..151 | 98 | | Minus |
| 2R | 12199834..12200039 | 152..357 | 100 | <- | Minus |
| 2R | 12199466..12199589 | 358..481 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:37 Download gff for
BS20501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8087339..8087544 | 152..357 | 100 | <- | Minus |
| arm_2R | 8087933..8088060 | 22..151 | 98 | | Minus |
| arm_2R | 8086971..8087094 | 358..481 | 100 | <- | Minus |
BS20501.pep Sequence
Translation from 16 to 480
> BS20501.pep
MADQQTERSFRKQHAVVVVRRKSPNLKKRPRFYRQIGLGFRAPAEAIDGT
YIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEK
RHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKVSKGQGAKKS
FKKY*
BS20501.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS11-PB | 154 | CG8857-PB | 1..154 | 1..154 | 807 | 100 | Plus |
| RpS11-PC | 155 | CG8857-PC | 1..155 | 1..154 | 660 | 83.3 | Plus |
