BS20502.complete Sequence
1316 bp assembled on 2011-01-11
GenBank Submission: KX801782
> BS20502.complete
GAAGTTATCAGTCGACATGAGTCCTGAAATATCCGGCTTCCGGCGGTTCC
TGCATTGGGGCCCCATTACCGCCCTTAGCATCATCAAGTGCATAACGCTG
ACAACGCTCTATATGAACTCGATGTGGTGGCCGCCAAATAAATCATTCGC
CGGATTCGCCCACCAGGCCCTCTTCCTGCTCCTTTCCACGCTGGCCACAT
TCAATTACGTCATGGCCACTTTGACTGGTCCCGGACTGATGCCAAAACAG
TGGCATCCCAAGGATCCCAAGGACGCCCAGTTCCTGCAGTACTGCAAAAA
GTGCGAGGGCTACAAGGCACCACGCTCCCATCATTGTCGCAAGTGTGATC
GCTGCGTCAAGAAGATGGACCATCACTGCCCATGGATCAATCACTGCGTT
GGCTGGGCCAACCACGCGTACTTCACATACTTCCTGCTCTTCTCCATCCT
GGGCAGCCTGCAGGGCACCGTGGTGCTATGCTGCTCCTTCTGGCGGGGAA
TCTACCGCTACTACTATCTCACCCACGGATTGGCGCACTTGGCTAGCGTG
CAGTTCACTCTGCTCAGCATCATCATGTGCATTCTGGGCATGGGCCTGGC
CATCGGTGTCGTCATTGGCCTGAGCATGCTGCTGTTCATTCAGCTGAAGA
CGATTGTAAACAACCAGACGGGCATAGAGATCTGGATAGTGGAGAAGGCC
ATTTACCGCCGATATAGGAATGCCGACTGCGACGACGAGTTCCTATATCC
CTATGATTTGGGCTGGCGGGCAAATTTGCGACTGGTATTCAATGACGAGT
GCCAAAAGCGAGGCGATGGCATCGAGTGGCCAGTGGTGGAGGGTTGTGAT
CAGTATACATTGACGCGCGAGCAACTGGCGCAGAAGGAGGAGAAACGAGC
TCGAACCCGCACCTTCAAATGCACAAGGCCAGTGACTGGCCGTTGGCTGC
CGATCTTTTCGCAGGGTTGGCGTGTTTGTGTGGCCGCTCCCTGCTCCGAT
GAGCCACGCATCAGCCTGCGACCCAACGACATGATTAAGGTCACTCGCTT
CCGCAACCACTGGCTGTTCGGCGAGCGAGTGCTTTCCGAGCAAGAGCTAG
CTGGCGTCAAGAAGCGCCAACGCAAGGGTCCCATTCGTGGCTGGTTCCCA
CGACGCAGCGCCGTTGAGGTCATTGAGGCGGTCCATGAAGGCAGCGGCGA
TGGCAACAGCGAGACACCAGCACCTGCGGCCCAGAATGGCAACGCCCACA
GCCACTTGAAGCAGCAGCAGCGAAACGGACATGCCAAAAAGTACATGTAG
AAGCTTTCTAGACCAT
BS20502.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5196-RA | 1284 | CG5196-PA | 1..1284 | 17..1300 | 6405 | 99.9 | Plus |
| CG5196-RB | 1188 | CG5196-PB | 1..1188 | 113..1300 | 5925 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5196-RA | 1679 | CG5196-RA | 97..1380 | 17..1300 | 6405 | 99.9 | Plus |
| CG5196-RB | 2023 | CG5196-RB | 502..1724 | 78..1300 | 6100 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12410460..12410980 | 345..865 | 2590 | 99.8 | Plus |
| 3R | 32079331 | 3R | 12411034..12411469 | 865..1300 | 2180 | 100 | Plus |
| 3R | 32079331 | 3R | 12409255..12409440 | 78..263 | 930 | 100 | Plus |
| 3R | 32079331 | 3R | 12410273..12410358 | 261..346 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 12408412..12408473 | 17..78 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:52:08 has no hits.
BS20502.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:15 Download gff for
BS20502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5196-RA | 91..1374 | 17..1300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:39 Download gff for
BS20502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5196-RA | 97..1380 | 17..1300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:43 Download gff for
BS20502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5196-RA | 97..1380 | 17..1300 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:43 Download gff for
BS20502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12408412..12408472 | 17..77 | 100 | -> | Plus |
| 3R | 12409255..12409439 | 78..262 | 100 | -> | Plus |
| 3R | 12410275..12410356 | 263..344 | 100 | -> | Plus |
| 3R | 12410460..12410980 | 345..865 | 99 | -> | Plus |
| 3R | 12411035..12411469 | 866..1300 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:39 Download gff for
BS20502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8234134..8234194 | 17..77 | 100 | -> | Plus |
| arm_3R | 8234977..8235161 | 78..262 | 100 | -> | Plus |
| arm_3R | 8235997..8236078 | 263..344 | 100 | -> | Plus |
| arm_3R | 8236182..8236702 | 345..865 | 99 | -> | Plus |
| arm_3R | 8236757..8237191 | 866..1300 | 100 | | Plus |
BS20502.pep Sequence
Translation from 16 to 1299
> BS20502.pep
MSPEISGFRRFLHWGPITALSIIKCITLTTLYMNSMWWPPNKSFAGFAHQ
ALFLLLSTLATFNYVMATLTGPGLMPKQWHPKDPKDAQFLQYCKKCEGYK
APRSHHCRKCDRCVKKMDHHCPWINHCVGWANHAYFTYFLLFSILGSLQG
TVVLCCSFWRGIYRYYYLTHGLAHLASVQFTLLSIIMCILGMGLAIGVVI
GLSMLLFIQLKTIVNNQTGIEIWIVEKAIYRRYRNADCDDEFLYPYDLGW
RANLRLVFNDECQKRGDGIEWPVVEGCDQYTLTREQLAQKEEKRARTRTF
KCTRPVTGRWLPIFSQGWRVCVAAPCSDEPRISLRPNDMIKVTRFRNHWL
FGERVLSEQELAGVKKRQRKGPIRGWFPRRSAVEVIEAVHEGSGDGNSET
PAPAAQNGNAHSHLKQQQRNGHAKKYM*
BS20502.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5196-PA | 427 | CG5196-PA | 1..427 | 1..427 | 2354 | 100 | Plus |
| CG5196-PB | 395 | CG5196-PB | 1..395 | 33..427 | 2184 | 100 | Plus |
| CG4483-PA | 435 | CG4483-PA | 10..383 | 9..387 | 1066 | 49.1 | Plus |
| CG8314-PA | 293 | CG8314-PA | 39..273 | 23..250 | 243 | 26.9 | Plus |
| Dnz1-PA | 276 | CG6627-PA | 27..235 | 22..234 | 237 | 29.4 | Plus |
