Clone BS20511 Report

Search the DGRC for BS20511

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:205
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG11458-RA
Protein status:BS20511.pep: gold
Sequenced Size:329

Clone Sequence Records

BS20511.complete Sequence

329 bp assembled on 2011-01-11

GenBank Submission: KX803856

> BS20511.complete
GAAGTTATCAGTCGACATGCGCTTCGCTCTACTTGCCGTTCTCCTCATCG
GAGTGATCTTTGCCTTTGTTTCCGCCGGCGGTGGCGGTGGTGGCGGAGGT
GGCCAAGGAGGTTGGCAGAAGAATGGAGGAGGAGGAGGAGGAGGTGGTCA
AGGAGGCTGGCAAAAGGGCGGCGGCGGCGGAGGAGGTGGCAAACATGGAG
GTGGTGGCGGAGGAGGTGGCAAGCATGGAGGTGGAAACGGCGGTGGTGGA
AAGCACGGTGGCGGCGGTGGAGGCGGTGGAGGTGGTGGAAAGCATGGAGG
CGGCGGCTGGTAAAAGCTTTCTAGACCAT

BS20511.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11458-RA 297 CG11458-PA 1..297 17..313 1485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11458-RA 537 CG11458-RA 50..348 16..314 1495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20905844..20906142 16..314 1495 100 Plus
Blast to na_te.dros performed 2014-11-26 15:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 887..938 104..50 106 69.1 Minus

BS20511.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:37:31 Download gff for BS20511.complete
Subject Subject Range Query Range Percent Splice Strand
CG11458-RA 51..345 17..311 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:18 Download gff for BS20511.complete
Subject Subject Range Query Range Percent Splice Strand
CG11458-RA 51..345 17..311 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:13 Download gff for BS20511.complete
Subject Subject Range Query Range Percent Splice Strand
CG11458-RA 51..345 17..311 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:13 Download gff for BS20511.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20905845..20906139 17..311 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:18 Download gff for BS20511.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20898945..20899239 17..311 100   Plus

BS20511.pep Sequence

Translation from 16 to 312

> BS20511.pep
MRFALLAVLLIGVIFAFVSAGGGGGGGGGQGGWQKNGGGGGGGGQGGWQK
GGGGGGGGKHGGGGGGGGKHGGGNGGGGKHGGGGGGGGGGGKHGGGGW*

BS20511.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11458-PA 98 CG11458-PA 1..98 1..98 571 100 Plus
CG5172-PD 172 CG5172-PD 76..172 23..98 280 59.8 Plus
CG13376-PC 193 CG13376-PC 30..131 19..98 270 54.9 Plus
CG13376-PB 200 CG13376-PB 37..138 19..98 270 54.9 Plus
CG13376-PD 204 CG13376-PD 41..142 19..98 270 54.9 Plus
CG13376-PC 193 CG13376-PC 47..140 14..98 261 52 Plus
CG13376-PB 200 CG13376-PB 54..147 14..98 261 52 Plus
CG13376-PC 193 CG13376-PC 45..182 8..97 257 45.7 Plus
CG13376-PB 200 CG13376-PB 52..189 8..97 257 45.7 Plus
CG5172-PD 172 CG5172-PD 24..73 52..96 171 66 Plus
CG13376-PC 193 CG13376-PC 111..191 14..73 171 46.9 Plus
CG13376-PB 200 CG13376-PB 118..198 14..73 171 46.9 Plus
CG13376-PC 193 CG13376-PC 15..88 43..98 164 48.7 Plus
CG13376-PB 200 CG13376-PB 22..95 43..98 164 48.7 Plus
CG5172-PD 172 CG5172-PD 113..171 21..63 140 52.5 Plus