BS20511.complete Sequence
329 bp assembled on 2011-01-11
GenBank Submission: KX803856
> BS20511.complete
GAAGTTATCAGTCGACATGCGCTTCGCTCTACTTGCCGTTCTCCTCATCG
GAGTGATCTTTGCCTTTGTTTCCGCCGGCGGTGGCGGTGGTGGCGGAGGT
GGCCAAGGAGGTTGGCAGAAGAATGGAGGAGGAGGAGGAGGAGGTGGTCA
AGGAGGCTGGCAAAAGGGCGGCGGCGGCGGAGGAGGTGGCAAACATGGAG
GTGGTGGCGGAGGAGGTGGCAAGCATGGAGGTGGAAACGGCGGTGGTGGA
AAGCACGGTGGCGGCGGTGGAGGCGGTGGAGGTGGTGGAAAGCATGGAGG
CGGCGGCTGGTAAAAGCTTTCTAGACCAT
BS20511.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11458-RA | 297 | CG11458-PA | 1..297 | 17..313 | 1485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11458-RA | 537 | CG11458-RA | 50..348 | 16..314 | 1495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20905844..20906142 | 16..314 | 1495 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 887..938 | 104..50 | 106 | 69.1 | Minus |
BS20511.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:37:31 Download gff for
BS20511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11458-RA | 51..345 | 17..311 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:18 Download gff for
BS20511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11458-RA | 51..345 | 17..311 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:13 Download gff for
BS20511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11458-RA | 51..345 | 17..311 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:13 Download gff for
BS20511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20905845..20906139 | 17..311 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:18 Download gff for
BS20511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20898945..20899239 | 17..311 | 100 | | Plus |
BS20511.pep Sequence
Translation from 16 to 312
> BS20511.pep
MRFALLAVLLIGVIFAFVSAGGGGGGGGGQGGWQKNGGGGGGGGQGGWQK
GGGGGGGGKHGGGGGGGGKHGGGNGGGGKHGGGGGGGGGGGKHGGGGW*
BS20511.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11458-PA | 98 | CG11458-PA | 1..98 | 1..98 | 571 | 100 | Plus |
CG5172-PD | 172 | CG5172-PD | 76..172 | 23..98 | 280 | 59.8 | Plus |
CG13376-PC | 193 | CG13376-PC | 30..131 | 19..98 | 270 | 54.9 | Plus |
CG13376-PB | 200 | CG13376-PB | 37..138 | 19..98 | 270 | 54.9 | Plus |
CG13376-PD | 204 | CG13376-PD | 41..142 | 19..98 | 270 | 54.9 | Plus |
CG13376-PC | 193 | CG13376-PC | 47..140 | 14..98 | 261 | 52 | Plus |
CG13376-PB | 200 | CG13376-PB | 54..147 | 14..98 | 261 | 52 | Plus |
CG13376-PC | 193 | CG13376-PC | 45..182 | 8..97 | 257 | 45.7 | Plus |
CG13376-PB | 200 | CG13376-PB | 52..189 | 8..97 | 257 | 45.7 | Plus |
CG5172-PD | 172 | CG5172-PD | 24..73 | 52..96 | 171 | 66 | Plus |
CG13376-PC | 193 | CG13376-PC | 111..191 | 14..73 | 171 | 46.9 | Plus |
CG13376-PB | 200 | CG13376-PB | 118..198 | 14..73 | 171 | 46.9 | Plus |
CG13376-PC | 193 | CG13376-PC | 15..88 | 43..98 | 164 | 48.7 | Plus |
CG13376-PB | 200 | CG13376-PB | 22..95 | 43..98 | 164 | 48.7 | Plus |
CG5172-PD | 172 | CG5172-PD | 113..171 | 21..63 | 140 | 52.5 | Plus |