BS20512.complete Sequence
2078 bp assembled on 2011-02-17
GenBank Submission: KX805832
> BS20512.complete
GAAGTTATCAGTCGACATGAACGATCCCGGCGATATACCACTGACACACA
CAAGCACTCCGGACAGCAGGCCGCCCTGCAGCATCATTTCCATCATACCC
ACCATAGGGATGTCCTCATGTCGCGGAAGAGCCGAGGCATTCGCACGGAG
TCTGTCCTCCAAGCTGCGCACCTTGGGATCACAGACAACCGAGGAGGGCG
AGGGCAACGCGGAGGATGAGCCGATCATAAATGGAACCAGCACGAACACG
TGGGTCAACTCGCACGACTCGGAGCAGACGGTGACGGACCTGCAGCCACT
GCGCCATGAGTCCGACTCCTTCTTCGACTTCGACTGCGAGCTGGAGTCGC
CGGGGAGTCCTGTGGACGAGTGCGAGTACCTGCGCTTGATCGAAACTGCC
TCGAATACGCCGCACAACTCTACGGCGGAGTCGGGCTATGCCTGCGCTTC
AATGGCCAGCAGCCATAGTAGCAGCAATGATGGTCCGTACTTTGATGCAT
CCGCTTCCACATCCACAGCTGCAGCTGCCCAGGATCAGACGCTGCCAGCC
TCGGAACACAAAGAGTATGTAAATACCCTACAACTAAACGGAAAGCATGG
ACTGGCCAATGGAGTGCAGGAGGAGCAGCCAGCTTTCCAGGATGATGTGC
AGGAGGACGAGGCCTTCTTGCAGGCACAGATCCTCAATGAGCTCCAGAAG
CACAGCAACAGTTTGACGGAAGTGGAGCAGACAAAGCCCGAGGAGGGCAA
GCTCACCAATGGGCATCTCGAGAAGGTGGAGGAGCTGGAACTGAAGGACG
TCCTGGAGGTAGCTGGTACTACAAACAGAGCTCCAAAGGTGATCGCCGCT
CCACAAGAAGTGGAAGCCTTTGCTGATAGAAGCCAAGAGCAATCACCTAA
TGACAGAGTTCAAAAAGAAAGCTCCCAGGAAAGGGTTCCAGAAGGAACTC
CATTCGAAGGAGTCCAAGGAGAATCTCCTAGCGACAGAGTCCAGACGGAC
GCGTCCGATGAAAGGGTTCAAGAGGAAATTTCCAACGATACTGTTCAAGT
GGAATCCAACCACAAATCCGCCACAGAATCAATTTCCACCGAGGTAACCA
CGTTGGAAAGATCACCAGAGGAAAGCAGGAATGATGAACTCTCGCCAGAC
AGTGGTGTGGATGAAACAGACAAGTCGGCCAGTAATCTCACCGTAGATGT
GGACCTGGCCCAAATCGAACAGGCCAAACAGGATGCCACTGAGGCTGTGG
AAAAGAGTGGTGCCCCCAGTCGGGGTACCACAGTCGATACCACAGATGAT
GAAGACGATTGTAGACCACAGCGCATCAGGCGTTGTTCCTCCCTGAAAAC
GGGAAAGACACCACCCGGAACTCCGGGTCGCAAGAAGATCGTTAGGTTTG
CCGACGTCCTTGGCTTGGATCTGGCCGATGTAAAGACCTTCCTGGACGAG
ATACCCACCATACCGAAATCGGCGTTCGAGGACCTGGAAATACTGGAGTC
GGAGCCGCCACTTCAGCTGGGGCCCAAGTCCGACAAGCTATTGATGCCTC
TGTTCCAGCAGCCAGGAGGCCTGCCCAAGTTCCTCGATGCGGTCCGGGAG
AAGCAGGTGTCCCTGGAGAACGCTGCCGTGACGGACAACATCAACCAGAC
GATATCCGGATCTGTGCGTGTGCGCAATCTGGACTTTCACAAGTCGGTGC
ACATAAGGTACTCGCTGGACGGATGGAGAAGCTACGCCGACCTGCAGGCA
AACTACGTGGAGAACTCTTGCGATGGCTTCTCCGACATCTTCACCTTCGT
GCTGTTCGGTAACTCGCTGCACGTGGGCCAGAGGCTGGAGTTCGCCGTAA
GGTTCCAGTGCAAAGGCCAACAGTTCTGGGACAACAACTACGGGGCCAAC
TACTGCTTCCAGTGTTTGCCCAGCTCGACACATACCGCCGGCGGCTCCAC
GGCATCGCCTCCGTCTGTGGCGACTGGCGCCGTATCCACCGGCCATAGTG
CCAGTCTGGTCGGATTGCTAAGCCCCACGGCGGGCGATGCCTGGTGCAGC
TCCTTCTACTAAAAGCTTTCTAGACCAT
BS20512.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gbs-76A-RD | 2046 | CG9619-PD | 1..2046 | 17..2062 | 10215 | 100 | Plus |
| Gbs-76A-RC | 2046 | CG9619-PC | 1..2046 | 17..2062 | 10215 | 100 | Plus |
| Gbs-76A-RB | 2046 | CG9619-PB | 1..2046 | 17..2062 | 10215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gbs-76A-RD | 5214 | CG9619-RD | 1310..3355 | 17..2062 | 10215 | 100 | Plus |
| Gbs-76A-RC | 4408 | CG9619-RC | 1068..3113 | 17..2062 | 10215 | 100 | Plus |
| Gbs-76A-RB | 3556 | CG9619-RB | 216..2261 | 17..2062 | 10215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19283223..19285103 | 2062..182 | 9390 | 99.9 | Minus |
| 3L | 28110227 | 3L | 19285224..19285391 | 184..17 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:15:05 has no hits.
BS20512.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:35 Download gff for
BS20512.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9619-RA | 201..2244 | 17..2060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:14 Download gff for
BS20512.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gbs-76A-RA | 201..2244 | 17..2060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:56 Download gff for
BS20512.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gbs-76A-RB | 216..2259 | 17..2060 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:56 Download gff for
BS20512.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19283225..19285100 | 185..2060 | 99 | <- | Minus |
| 3L | 19285224..19285391 | 17..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:14 Download gff for
BS20512.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19276325..19278200 | 185..2060 | 99 | <- | Minus |
| arm_3L | 19278324..19278491 | 17..184 | 100 | | Minus |
BS20512.pep Sequence
Translation from 16 to 2061
> BS20512.pep
MNDPGDIPLTHTSTPDSRPPCSIISIIPTIGMSSCRGRAEAFARSLSSKL
RTLGSQTTEEGEGNAEDEPIINGTSTNTWVNSHDSEQTVTDLQPLRHESD
SFFDFDCELESPGSPVDECEYLRLIETASNTPHNSTAESGYACASMASSH
SSSNDGPYFDASASTSTAAAAQDQTLPASEHKEYVNTLQLNGKHGLANGV
QEEQPAFQDDVQEDEAFLQAQILNELQKHSNSLTEVEQTKPEEGKLTNGH
LEKVEELELKDVLEVAGTTNRAPKVIAAPQEVEAFADRSQEQSPNDRVQK
ESSQERVPEGTPFEGVQGESPSDRVQTDASDERVQEEISNDTVQVESNHK
SATESISTEVTTLERSPEESRNDELSPDSGVDETDKSASNLTVDVDLAQI
EQAKQDATEAVEKSGAPSRGTTVDTTDDEDDCRPQRIRRCSSLKTGKTPP
GTPGRKKIVRFADVLGLDLADVKTFLDEIPTIPKSAFEDLEILESEPPLQ
LGPKSDKLLMPLFQQPGGLPKFLDAVREKQVSLENAAVTDNINQTISGSV
RVRNLDFHKSVHIRYSLDGWRSYADLQANYVENSCDGFSDIFTFVLFGNS
LHVGQRLEFAVRFQCKGQQFWDNNYGANYCFQCLPSSTHTAGGSTASPPS
VATGAVSTGHSASLVGLLSPTAGDAWCSSFY*
BS20512.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:16:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gbs-76A-PD | 681 | CG9619-PD | 1..681 | 1..681 | 3525 | 100 | Plus |
| Gbs-76A-PC | 681 | CG9619-PC | 1..681 | 1..681 | 3525 | 100 | Plus |
| Gbs-76A-PB | 681 | CG9619-PB | 1..681 | 1..681 | 3525 | 100 | Plus |
| Gbs-76A-PA | 681 | CG9619-PA | 1..681 | 1..681 | 3525 | 100 | Plus |
| Gbs-70E-PA | 330 | CG9238-PA | 101..276 | 454..629 | 175 | 28.9 | Plus |
