BS20517.complete Sequence
1355 bp assembled on 2011-01-11
GenBank Submission: KX806464
> BS20517.complete
GAAGTTATCAGTCGACATGTGGCAGGGAATCGTGTGCAGCTTGGCTTTAT
GCCTCGTCGGATTGGCGGGTCTCGGCATCGCCAACAATCTCGCCGGCTAC
GAAGGTTATACAAAATACACGGTGCAACATGGAGACGAGAATGCCTTCAA
GTACATGGTCGACCTGCAGACGAATGACGCGGAGCTGGACTTTTGGTTGC
TGACCAGAAACTCCTCCGTGCTGACAGTGAGTCCCCGGCGGAAGACACAG
TTCGAGGCGAGTCTTTCCAGTTTGGGAGTTAGCTACGAGATGCAGCCGCT
CATGGAGCTGATGGCGGCCCTTCAAGCGAACAGTTCCTTTGCGGATGACA
ACTACGATGGGGAGTACGAGGAGTGCCAGCAGGATGAGTGCGAGCAGGCG
GAGCGACCACGTCGAAGGACTCGTCGTCAGGCTCGCGGCTTCTTCTCGCA
CTATCCGCGGTATCATGAGGTGCTCAGCTTCATGAGTGGCTTGGCCGCCA
GATATCCTCAGTTCTGCCGCTATGAATCCTTGGGTCGTTCCAACGAGGGT
CGCCACATAGCTGCTCTCTCTATTTCACTGAACAGTAGGGTACGTCCTCG
TCGAGTGGCCTATATCCAGGCAGCCACCCACGGTAGGGAGTGGATTACTA
CGCAGACCGTTCTCTACTTGGCCTACGAACTGCTGAGCAATCTGCGCGCC
TTCACGAGGGTCCTGCAGGATGTGGAGATCTTTCTGGTGCCGCTGGTCAA
TCCCGATGGCTATGAATACACGCACACAACGGATCGTTTCTGGCGCAAGA
ACCGTCATCGTTATGCGGGTCATTCCTGCTCCGGCGTGGACATCAATCGT
AACTTTGGCAATCACTGGAACTATCAGGGAGCCAGCCAGAACCTCTGCTC
GGAGGTGTACTCGGGCACTGCGCCCAATTCGGAGCCGGAGACCTCGGCGG
TGGTGCGGTATCTGGAATTCAATCGAAACCGTGTGAAACTCAGCCTGGAT
GTTCACTCATTTGGCAAATTCATTTTTTATCCCTACGGCTATGCGAAAAA
CACCGTGCCACCAACCGTGGGAACGCTGCGCTCGGTGGCTCTGAGGGCCG
CCAACCAGATCGGCAGGTACCGTGGAACGCGCTACACCACCGGCACCTCC
GCCTCCATTTTGTACGAGGCCTCCGGCAGCTTGGACGACTTCGCCTATGG
CAATCTGGGAATCCCGCTGTCCTACACGCTCGAGCTGCCCGGTGACGAGT
TCCATGTGCCCGCCCACGACATCATCCACGTCTGCAAGGAGACATTCGCC
GGCTTCATCGAGTTCATCCGGCACGTCAGCCTTTACTAGAAGCTTTCTAG
ACCAT
BS20517.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:53:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8563-RB | 1323 | CG8563-PB | 1..1323 | 17..1339 | 6600 | 99.9 | Plus |
| CG8563-RA | 1323 | CG8563-PA | 1..1323 | 17..1339 | 6600 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8563-RB | 2121 | CG8563-RB | 690..2015 | 17..1342 | 6615 | 99.9 | Plus |
| CG8563-RA | 1786 | CG8563-RA | 355..1680 | 17..1342 | 6615 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7393592..7394269 | 105..782 | 3375 | 99.9 | Plus |
| 3L | 28110227 | 3L | 7395613..7395907 | 1048..1342 | 1475 | 100 | Plus |
| 3L | 28110227 | 3L | 7394936..7395090 | 893..1047 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 7394737..7394848 | 781..892 | 560 | 100 | Plus |
| 3L | 28110227 | 3L | 7391431..7391519 | 17..105 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:53:14 has no hits.
BS20517.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:28 Download gff for
BS20517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8563-RA | 353..1675 | 17..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:51 Download gff for
BS20517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8563-RA | 355..1677 | 17..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:04 Download gff for
BS20517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8563-RA | 355..1677 | 17..1339 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:04 Download gff for
BS20517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7391431..7391519 | 17..105 | 100 | -> | Plus |
| 3L | 7393593..7394268 | 106..781 | 99 | -> | Plus |
| 3L | 7394738..7394848 | 782..892 | 100 | -> | Plus |
| 3L | 7394936..7395090 | 893..1047 | 100 | -> | Plus |
| 3L | 7395613..7395904 | 1048..1339 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:51 Download gff for
BS20517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7388036..7388190 | 893..1047 | 100 | -> | Plus |
| arm_3L | 7388713..7389004 | 1048..1339 | 100 | | Plus |
| arm_3L | 7384531..7384619 | 17..105 | 100 | -> | Plus |
| arm_3L | 7386693..7387368 | 106..781 | 99 | -> | Plus |
| arm_3L | 7387838..7387948 | 782..892 | 100 | -> | Plus |
BS20517.pep Sequence
Translation from 16 to 1338
> BS20517.pep
MWQGIVCSLALCLVGLAGLGIANNLAGYEGYTKYTVQHGDENAFKYMVDL
QTNDAELDFWLLTRNSSVLTVSPRRKTQFEASLSSLGVSYEMQPLMELMA
ALQANSSFADDNYDGEYEECQQDECEQAERPRRRTRRQARGFFSHYPRYH
EVLSFMSGLAARYPQFCRYESLGRSNEGRHIAALSISLNSRVRPRRVAYI
QAATHGREWITTQTVLYLAYELLSNLRAFTRVLQDVEIFLVPLVNPDGYE
YTHTTDRFWRKNRHRYAGHSCSGVDINRNFGNHWNYQGASQNLCSEVYSG
TAPNSEPETSAVVRYLEFNRNRVKLSLDVHSFGKFIFYPYGYAKNTVPPT
VGTLRSVALRAANQIGRYRGTRYTTGTSASILYEASGSLDDFAYGNLGIP
LSYTLELPGDEFHVPAHDIIHVCKETFAGFIEFIRHVSLY*
BS20517.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8563-PB | 440 | CG8563-PB | 1..440 | 1..440 | 2331 | 100 | Plus |
| CG8563-PA | 440 | CG8563-PA | 1..440 | 1..440 | 2331 | 100 | Plus |
| CG8560-PB | 418 | CG8560-PB | 2..406 | 9..429 | 545 | 32.6 | Plus |
| CG8560-PA | 418 | CG8560-PA | 2..406 | 9..429 | 545 | 32.6 | Plus |
| CG18417-PA | 427 | CG18417-PA | 108..420 | 135..437 | 500 | 37.3 | Plus |
