BS20519.complete Sequence
2429 bp assembled on 2011-02-17
GenBank Submission: KX804140
> BS20519.complete
GAAGTTATCAGTCGACATGGTTGCCGATATATTCAGTGAATATTATATAT
GCAATTTCAACGATGCGGTGACAGTTGAAGATCTGCCCGCGGATGAGACA
CTGCGTCAATTGTGGACCCGCCAGAAACTGTGGACAATAGATGAACTCCG
GGAGATCCTTCAACGCTGGCAGGAGCATGTCAAGCCAGATCCGAATGATA
ATCCCACCTCACAACTCAAGGATTTCCTGCTGCTGATATTCGCTTTTGTT
CAAAACAGTTTTACTGGGCCCTTTGACAAACTCGAAGAGTACCAACAAAT
CCATAGTGAACTAGAGCTGGAGAAACTCGACGCACTCGAGAAACTGAAGG
CCAGCGGCGAGGAACTGAATCCAAATGTAAAATCTGTAGAACTACTACTG
ATTGCCAGGGAAATCCTTGAGGGACTTTTAGAAAACCATCCAGAATCAAA
GGTCCTGATTTGGTGGCGATTGCGTCTGATCTGCCTGCATCAACATGTGC
TGGATGATTTGGCGGCCTCCCTGTATGAGCAGTTTAAGTCAGCAGCTGGA
CATCTTCAGGCTCATTTCAATCAGTTTGAGAGCAGGGAACTGCAATCCCT
GCTACTACTGGAGTTGGCCAATGGCTACCTGCAGTTTCATCGCTCTGAAA
TAGCCTCCCAAATACTGGATGAACTGTGCAAGCATCTCCAGGTGGAGCTA
AAAGTTGAGGGTTTACTAGGAGTACGCACCAAATTCCAGCAGAAGGCCCT
GCCACAACTCTGCCTCAAAGTTGAGCATCTAAACGAGCAGCAGCCTCTGC
CTCCAGCCGTCCAAACAAATGAGACGACCAAATTGCCAAAACTGCTTCTT
CTGGAGGATGACACGCGACTGGAGCGGATACGCTTTGTGGAACTGAAGGA
CAACGAAGTGATGACGCTTCCCAGTGTTCTCCAAGCTCTGGTGCTGGCCA
AAGTAAAGCAATTGAAACGCTCAACGCCTAAGGATCGCCTGGCGGATGAA
CAACTGGAGCCGTATACACAAACCCTACTTTACCAGGAACACGGACCATT
CCAAGTCCGGCAGTCAGCCCTTCTTCTAAACTGCCTTCAGGAATCGAATC
AAAGAAGGACAGTCGAACGCAGCTGGAAACAATGCGAGGAGTGTGTCAAA
CTGCTTGACACCTCCGAGGAGGAGCTATCGCTGCGATCCCGACTCTCCTA
CGGTTTCGCCGCCCACTTGAGTCCCAAGTGGCAGGTGCAGCTACAGCTTG
TCGACTTGCTGCGATCCTTGGGCATGACCAAAACAGCTCTGGACATCTGT
CTTCGCATACACGCCTGGCAGCAGGTGATCGAGTGCTACACGAGTCTGGA
ACTCCGTCACAAGGCAGCGGAGATCATCAGGCAGGAACTGGAGAAGAAGC
CAACGGCATTGCTGTACTGCCTCCTTGGCGATGCTATCGATGATCCTTCG
TTCTATGAGCAGGCTTGGTTGTATTCCAAAAAGACAAGTGGAAAAGCTCA
AGCCTATTGGGGCAACCATTTCTATAGGAGTGCGGATTATGCCCAGGCAA
TGGATCACTTCGAGATTTCGCTAGAGATTAACAACTTGCAGGAAGCGATT
CTTTTGCGCTGTGGCTACTGTGCAATCCAACTGGAACGCTGGGAGCCGGC
TGTTAAATATTATTTGGCTTACACCCACCTGGAACCCAATGGATTCGAAT
CCTGGAATAACCTAGCCAAGGCCCTGATTAAATTGGGTGACAAACAGCGG
GCCCATCGTGTTCTTGGTGAGGCCTTGAAGTGCAACTACAGCAACTGGAA
GGTTTGGGAGAACTACATGCTGGTGTCCGTGGATACTTCCCACTGGGACG
ACGCCATGCGGGCTTACCAGCGCATGGCGGAGCTAAAGCAGCACTACCTC
GATCAGGAAGTGCTAACCCGTATTGTTTACGGAGTTTCCAAGGAGGACCC
CGCCGGCTCAAGTGCTCTGATCAAAAGACTCATAAAGCTTCTGGGACAGC
AGAGCATTCAACATGGTAACGAGCCTCTTGTGTGGGAACTGGCCGCCTTG
GTGGCCCAAACGCCACTGAAGAAGGCCGAGAAACTGGTAAAATCGTATCG
TGCGTACACACCGAAGCATTTGGGCTGGGAAACCAAGTCGGAGCACGCTT
TAAAAGCCCTAGATCTTTGTTTAGAGGTCTGCGATCTCTCAGTGGCGGCC
ATCACAGAGCACATTCAAGAGGAAAGTGAGGTAATGATTACCTCTCAACT
AAATTCAGCCAGACTGGCGGGAACATCTTGTCTGAATGCTTTGAAGAGAG
CCATAAATGTGGATGTATCGGCAGAACAGACTGCAAAAGTGGAGCAGCTG
GAAAAACGCATCGAAGACCTGACAAAAATTGTCCAGGAACGAATGAATGC
GTCTCGATCTTAGAAGCTTTCTAGACCAT
BS20519.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5290-RA | 2397 | CG5290-PA | 1..2397 | 17..2413 | 11985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5290-RA | 2917 | CG5290-RA | 255..2651 | 17..2413 | 11985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:32:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17909749..17911207 | 2413..955 | 7295 | 100 | Minus |
| 3L | 28110227 | 3L | 17911269..17911773 | 954..450 | 2525 | 100 | Minus |
| 3L | 28110227 | 3L | 17911824..17912198 | 453..79 | 1875 | 100 | Minus |
| 3L | 28110227 | 3L | 17912248..17912311 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:32:59 has no hits.
BS20519.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:19:05 Download gff for
BS20519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5290-RA | 247..2643 | 17..2413 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:44 Download gff for
BS20519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5290-RA | 255..2651 | 17..2413 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:00 Download gff for
BS20519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5290-RA | 255..2651 | 17..2413 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:00 Download gff for
BS20519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17911826..17912196 | 81..451 | 100 | <- | Minus |
| 3L | 17912248..17912311 | 17..80 | 100 | | Minus |
| 3L | 17909749..17911207 | 955..2413 | 100 | <- | Minus |
| 3L | 17911269..17911771 | 452..954 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:44 Download gff for
BS20519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17902849..17904307 | 955..2413 | 100 | <- | Minus |
| arm_3L | 17904369..17904871 | 452..954 | 100 | <- | Minus |
| arm_3L | 17904926..17905296 | 81..451 | 100 | <- | Minus |
| arm_3L | 17905348..17905411 | 17..80 | 100 | | Minus |
BS20519.pep Sequence
Translation from 16 to 2412
> BS20519.pep
MVADIFSEYYICNFNDAVTVEDLPADETLRQLWTRQKLWTIDELREILQR
WQEHVKPDPNDNPTSQLKDFLLLIFAFVQNSFTGPFDKLEEYQQIHSELE
LEKLDALEKLKASGEELNPNVKSVELLLIAREILEGLLENHPESKVLIWW
RLRLICLHQHVLDDLAASLYEQFKSAAGHLQAHFNQFESRELQSLLLLEL
ANGYLQFHRSEIASQILDELCKHLQVELKVEGLLGVRTKFQQKALPQLCL
KVEHLNEQQPLPPAVQTNETTKLPKLLLLEDDTRLERIRFVELKDNEVMT
LPSVLQALVLAKVKQLKRSTPKDRLADEQLEPYTQTLLYQEHGPFQVRQS
ALLLNCLQESNQRRTVERSWKQCEECVKLLDTSEEELSLRSRLSYGFAAH
LSPKWQVQLQLVDLLRSLGMTKTALDICLRIHAWQQVIECYTSLELRHKA
AEIIRQELEKKPTALLYCLLGDAIDDPSFYEQAWLYSKKTSGKAQAYWGN
HFYRSADYAQAMDHFEISLEINNLQEAILLRCGYCAIQLERWEPAVKYYL
AYTHLEPNGFESWNNLAKALIKLGDKQRAHRVLGEALKCNYSNWKVWENY
MLVSVDTSHWDDAMRAYQRMAELKQHYLDQEVLTRIVYGVSKEDPAGSSA
LIKRLIKLLGQQSIQHGNEPLVWELAALVAQTPLKKAEKLVKSYRAYTPK
HLGWETKSEHALKALDLCLEVCDLSVAAITEHIQEESEVMITSQLNSARL
AGTSCLNALKRAINVDVSAEQTAKVEQLEKRIEDLTKIVQERMNASRS*
BS20519.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:24:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5290-PA | 798 | CG5290-PA | 1..798 | 1..798 | 4122 | 100 | Plus |
