BS20522.complete Sequence
1397 bp assembled on 2011-01-11
GenBank Submission: KX800417
> BS20522.complete
GAAGTTATCAGTCGACATGGACTACGATTTCAAGATGAAAACGCAGATAG
AGCGTACGAAAGTGGAGGACCTATTCAACTACGAGGGCTGTAAGGTGGGA
CGCGGAACATACGGCCACGTCTACAAGGCGAAATGGAAGGAGACAAGCGA
TGGCAAAGAATATGCCTTGAAGCAGATCGACGGCACCGGATTGTCCATGT
CCGCCTGCCGCGAGATCGCATTGCTGCGCGAACTGAAGCATCAGAACGTA
ATTACCCTCATCCGGGTGTTTCTGTCGCACAACGACCGCAAGGTGTTCCT
GTTGATCGACTATGCGGAGCACGACCTGTGGCACATCATTAAGTTCCATC
GGGCTGCTAAGGCCACCAAAAAGCAGGTTGTGGTTCCCCGCGGTATGGTT
AAAAGTCTGCTATATCAGATTCTGGATGGGATTCACTATCTGCACAGTAA
TTGGGTGCTACATCGTGACCTGAAGCCGGCCAACATCCTGGTGATGGGCG
ATGGCAACGAGAGGGGCCGCGTAAAAATCGCCGACATGGGTTTCGCGCGG
CTCTTCAATGCCCCATTGAAACCGCTGGCAGATCTGGATCCCGTGGTGGT
TACCTTTTGGTATCGCGCTCCGGAACTGCTGCTTGGCGCTCGTCACTACA
CCAAGGCTATCGACATCTGGGCTATTGGCTGTATTTTCGCCGAACTACTC
ACTTCGGAGCCCATCTTCCATTGCCGCCAGGAGGACATAAAGACCAGTAA
TCCGTACCATCACGATCAGCTAGACCGCATCTTCAATGTGATGGGCTTTC
CGCAGGACAAGGACTGGGAGGATATCAAGAAGATGCCGGAACATCATACG
CTGACAAAGGACTTTAAACGCTCCACATACTCCACCTGCTCGCTGGCCAA
ATACATGGAAAGGCACAAAATAAAGCCAGACAGCAAGGCCTTTCACCTGC
TGCAGAAGCTGCTGCTAATGGATCCCAACAAGCGCATCACCTCCGAACAG
GCCATGCAGGATCAGTACTTCCAGGAGGAGCCGCAGCCCACGCAGGACGT
GTTCGCCGGCTGCCCCATACCGTATCCCAAGCGTGAATTCCTCACCGACG
ACGACCAGGAAGATAAGTCGGATAATAAGCGACAGCAGCAACAGCAGCAG
CAACAACAGCAGCAACAGCAGCAGCAACAGCAGCAGCAACAACAACAGCA
GCAGCAGCAGCAGCAAATGAACGCTGAGCCGAATGCAAAGAGAGTTCGAT
TGTCCGGAGCTGGTAACCAGCAAGATTTTCACCACCAGCAGCAGCAGCAA
CAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAACAGATGATGTTCAA
TCAGCAGCAGAACTTCCAGAGGTTCAACTGAAAGCTTTCTAGACCAT
BS20522.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk8-RA | 1365 | CG10572-PA | 1..1365 | 17..1381 | 6795 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk8-RA | 1529 | CG10572-RA | 66..1430 | 17..1381 | 6795 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9837179..9838414 | 1381..146 | 6150 | 99.8 | Minus |
| 3L | 28110227 | 3L | 9838475..9838605 | 147..17 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:52:44 has no hits.
BS20522.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:23 Download gff for
BS20522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk8-RA | 46..1409 | 17..1380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:43 Download gff for
BS20522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk8-RA | 87..1450 | 17..1380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:53 Download gff for
BS20522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk8-RA | 66..1429 | 17..1380 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:53 Download gff for
BS20522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9837180..9838412 | 148..1380 | 99 | <- | Minus |
| 3L | 9838475..9838605 | 17..147 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:43 Download gff for
BS20522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9830280..9831512 | 148..1380 | 99 | <- | Minus |
| arm_3L | 9831575..9831705 | 17..147 | 100 | | Minus |
BS20522.pep Sequence
Translation from 16 to 1380
> BS20522.pep
MDYDFKMKTQIERTKVEDLFNYEGCKVGRGTYGHVYKAKWKETSDGKEYA
LKQIDGTGLSMSACREIALLRELKHQNVITLIRVFLSHNDRKVFLLIDYA
EHDLWHIIKFHRAAKATKKQVVVPRGMVKSLLYQILDGIHYLHSNWVLHR
DLKPANILVMGDGNERGRVKIADMGFARLFNAPLKPLADLDPVVVTFWYR
APELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHD
QLDRIFNVMGFPQDKDWEDIKKMPEHHTLTKDFKRSTYSTCSLAKYMERH
KIKPDSKAFHLLQKLLLMDPNKRITSEQAMQDQYFQEEPQPTQDVFAGCP
IPYPKREFLTDDDQEDKSDNKRQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
MNAEPNAKRVRLSGAGNQQDFHHQQQQQQQQQQQQQQQQQQMMFNQQQNF
QRFN*
BS20522.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk8-PA | 454 | CG10572-PA | 1..454 | 1..454 | 2423 | 100 | Plus |
| Cdk2-PC | 314 | CG10498-PC | 13..288 | 26..336 | 492 | 36.2 | Plus |
| Cdk2-PB | 314 | CG10498-PB | 13..288 | 26..336 | 492 | 36.2 | Plus |
| Cdk2-PA | 314 | CG10498-PA | 13..288 | 26..336 | 492 | 36.2 | Plus |
| Pitslre-PG | 778 | CG4268-PG | 389..683 | 26..341 | 489 | 35.5 | Plus |
