BS20523.complete Sequence
2111 bp assembled on 2011-02-17
GenBank Submission: KX805500
> BS20523.complete
GAAGTTATCAGTCGACATGAAAGCAATCGGAATCCTGCTGGCGATCGCCT
TGACCTCCGGGTTCCTGGTGGTCTCCGCCGTAAACTTGCCGGGAGTGCCC
GTGGACTTCGACCTGGACGACCACATCCTGTCCGCCATTGCAGACGACAT
AGCCGAGCGTCTGGCCAGGGAGTACATCACCTTCCTGAAGACCGGAGTGG
AGACGGCGGAGTTCTTGAAGCTCACCAATCAGCTGGCCAAGTCGCACAGT
GAGAAGGATATATTCACCAGGAACATGCCCGATCTAGAGCCCAGGGATAG
CTTCTTTGCGTGCGTGGCCTGTCGCTCGGTGACGCGGGTTTTGATTCGCA
CCATTCGCGAGGAGGACGGCGAGCTCCACGGGGAGAATAGCTCCGTTCTG
ATGAAGGAATTCGCTATGGACGTGTGCCGCCGCTTGAATCTGCAAACGGA
GGAGGTCTGCGAGGGATTGATCGATTCCAACCTGCCCTCCGTGGAGTACA
TCATGAGGAACTCCGAGAGTGATTCCCAGAGCTTCTGCTCCTTGTTCATG
GAGTTTAACTTCTGTAACACCGGTACAAATCAAGATTACAATTGGACCTT
GACTATAGACAATACTGGAGAGGCTTCGGCTGGCCCCAAGTCGGACACTC
CCACCTTTCAGGACTCGGACATCAGGATCTGCCAGTTCTCCGACATTCAC
CATGATCCCTACTACACCCCCGGCAGCCTGGCCACTTGTGCGGAACCCAT
GTGCTGTCAGAGGAACAAGGAGACCACCGAGGGTACGTCGGATGCAGCTG
GATACTGGGGCGACTACCGGGACTGCGATCTGCCTTGGCACGCCTTCGAG
TCAGCATTGGACAACGCGGTGGCCAACTCCAAGTGCGACTTCATTTACCA
GACTGGCGACATAGTGGACCACATGGTGTGGGCCACTTCCGTGGAGAAGA
ACACCATGGTGCTGACCAAGGTCAGTGAGCGGCTAAACGCGGCCTTCGGA
GATGTACCCGTATATCCCTGCATCGGAAACCACGAGCCTCATCCACTCAA
CCTCTTCAGTCCCGAGGGCGTTCCAGATGAGATCAGCACCAAGTGGCTCT
ATGAGCACCTGTACAACGATTGGTCCAAGTGGCTGCCGGCTGAAACCAAG
GAAACCATCCTTAAAGGAGGTTACTACACGGTGGTGCCCAGGAAGGGCTT
CCGTATCATCGCTCTAAACAGCAACGATTGCTATACGGACAACTTCTGGT
TGTATCACAGTGGCACGGACAAGATTCCCCAACTCCAGTGGTTCCACGAT
ACCCTGTTGGAGGCCGAGAAGAACGGGGAGTATGTCCACGTGCTGACCCA
CATTCCTTCGGGCGATGGAACCTGCTGGTCCGTTTGGGCTCGGGAATTCA
ACCGCTGCGTATCCCGCTTCAGGTCCACAATCAGTGGCATTTTCACAGGA
CACTCGCACAAGGACGAGCTATTCGTTTACTACTCGGAGGATGAAGGACA
CCCCACCGCAGTGGCGTGGAACGGAGGTGCTGTTACCACCTACTCCAACA
AGAACCCCAACTACCGAGAGTACGCCGTCAATCCCGAAACTTACACTGTG
ACCAACCACTGGACGTGGATTTACAACCTGACTGCTGCCAATCTGAAGCC
AGATGAACAGCCCGAGTGGTTCCTGGAGTACGAGTTCATCAAGGAGTTCA
CGGAAGATATGAGTCCGGCCGGAATCAGCAAGCTGCTCGATGAGTTCGCC
GAGAATCCCGAATTGATGAGAAAGTACTGGCGCTACCGAGTGACCTCAGC
AGATCCCCAGGTGAATGGAGGTTGTGATCGCAGCTGCTTGGCAGGATCTC
TTTGCCGAGCTGCTGTGACCATCAATTCCGAGCGAGAACGCTGCGAGGAG
CTGCGTGAGAAGTTGTTTGCCTCGCTGGACAATGAGGAGAGCACATCGTC
GTCGGGAAGCACTGAAGCCACCACCCCAAGTCCCAGCACCCCAGGGGGCA
ACGATGACAACGACGGTGGAGGATCCTCCACTTTGGGACTGCTCAGCGTT
AGCTCCCTGCTGGCTATAGTCCTCTCCATCCGCCTAGCCTTGTAGAAGCT
TTCTAGACCAT
BS20523.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15533-RA | 2079 | CG15533-PA | 1..2079 | 17..2095 | 10380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15533-RA | 2203 | CG15533-RA | 22..2101 | 16..2095 | 10385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30428841..30429878 | 16..1053 | 5175 | 99.9 | Plus |
| 3R | 32079331 | 3R | 30430083..30430803 | 1054..1774 | 3605 | 100 | Plus |
| 3R | 32079331 | 3R | 30431089..30431260 | 1924..2095 | 860 | 100 | Plus |
| 3R | 32079331 | 3R | 30430877..30431028 | 1773..1924 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:18:45 has no hits.
BS20523.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:36 Download gff for
BS20523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15533-RA | 17..2095 | 17..2095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:51 Download gff for
BS20523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15533-RA | 23..2101 | 17..2095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:32 Download gff for
BS20523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15533-RA | 23..2101 | 17..2095 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:32 Download gff for
BS20523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30428842..30429878 | 17..1053 | 99 | -> | Plus |
| 3R | 30430083..30430803 | 1054..1774 | 100 | -> | Plus |
| 3R | 30430879..30431028 | 1775..1924 | 100 | -> | Plus |
| 3R | 30431090..30431260 | 1925..2095 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:51 Download gff for
BS20523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26254564..26255600 | 17..1053 | 99 | -> | Plus |
| arm_3R | 26255805..26256525 | 1054..1774 | 100 | -> | Plus |
| arm_3R | 26256601..26256750 | 1775..1924 | 100 | -> | Plus |
| arm_3R | 26256812..26256982 | 1925..2095 | 100 | | Plus |
BS20523.pep Sequence
Translation from 16 to 2094
> BS20523.pep
MKAIGILLAIALTSGFLVVSAVNLPGVPVDFDLDDHILSAIADDIAERLA
REYITFLKTGVETAEFLKLTNQLAKSHSEKDIFTRNMPDLEPRDSFFACV
ACRSVTRVLIRTIREEDGELHGENSSVLMKEFAMDVCRRLNLQTEEVCEG
LIDSNLPSVEYIMRNSESDSQSFCSLFMEFNFCNTGTNQDYNWTLTIDNT
GEASAGPKSDTPTFQDSDIRICQFSDIHHDPYYTPGSLATCAEPMCCQRN
KETTEGTSDAAGYWGDYRDCDLPWHAFESALDNAVANSKCDFIYQTGDIV
DHMVWATSVEKNTMVLTKVSERLNAAFGDVPVYPCIGNHEPHPLNLFSPE
GVPDEISTKWLYEHLYNDWSKWLPAETKETILKGGYYTVVPRKGFRIIAL
NSNDCYTDNFWLYHSGTDKIPQLQWFHDTLLEAEKNGEYVHVLTHIPSGD
GTCWSVWAREFNRCVSRFRSTISGIFTGHSHKDELFVYYSEDEGHPTAVA
WNGGAVTTYSNKNPNYREYAVNPETYTVTNHWTWIYNLTAANLKPDEQPE
WFLEYEFIKEFTEDMSPAGISKLLDEFAENPELMRKYWRYRVTSADPQVN
GGCDRSCLAGSLCRAAVTINSERERCEELREKLFASLDNEESTSSSGSTE
ATTPSPSTPGGNDDNDGGGSSTLGLLSVSSLLAIVLSIRLAL*
BS20523.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15533-PA | 692 | CG15533-PA | 1..692 | 1..692 | 3728 | 100 | Plus |
| CG15534-PA | 666 | CG15534-PA | 16..664 | 16..690 | 1650 | 45.8 | Plus |
| CG3376-PA | 735 | CG3376-PA | 158..722 | 99..660 | 802 | 32.2 | Plus |
| CG3376-PC | 764 | CG3376-PC | 187..751 | 99..660 | 802 | 32.2 | Plus |
| CG3376-PB | 708 | CG3376-PB | 158..696 | 99..645 | 796 | 32.7 | Plus |
