BS20524.complete Sequence
1523 bp assembled on 2011-01-11
GenBank Submission: KX804456
> BS20524.complete
GAAGTTATCAGTCGACATGCTCGTAAAAACGCTTGGCGCACATTTTGCAG
CCGGGCAAAATGCAAAAAAATGCAGCTGCTGCGCTCTGCTGATTTCCCTG
CTCTGCGTATTACTTCTTAGTCTAAACCCTTTACCAGTAACCAGTCATGT
CACTAGCGCCGGATCATCAACAGCCCTATCTTCCGATCCCAACCTAGTGC
TGGTCAACAAATGTTGCGAGAAGTTCGAGATACACGTGGACCATGAGTGT
CAGCAGGTCAATGAAACGGACTACTTCCAGCCGATGTTCACCAGCTATGG
AGGAGAGCAAAACAGGCCCGTTAAGTTCAAATTCGTCATCGGGATTCCAA
ATTGTGGATCCATGCAGATGTGGCCAATATACCACTATGCTGGCAGCTCT
GATAAGCTAGTGTTACTGGATGATGGGAGGCTAAGGCATTACACCAATGC
CGAAAACGAAGCAGAGGAGCGTCATGGAATACAATCGGATTATGAGGAGG
ATATTGCCGGCAGTCTGGAACCGCTATACCATGACTACGATAAGGGATTG
TATTGCATTGACAAGGCCACTTCCAGTACTGGAGAGGAAAATGTGCTATT
CGCCAACATTTGCTTGGCCCGCAAGGAGATCAAGTGGAGTGACTCAAACT
TTCTGCTCCGCAAAATCTTAAACCCAATTTTCCATGGCATCTCGCTTGTT
ATCCTGCTGGTCATCGCCATCATCTATTTTATACTTCCTACTCTCAGAGA
TCTGGTTGGTAACATTGTGACAACGATAGCCATGTGCCTTATGGTAAGCC
AGGCAGCAGACCTTGTCAGAATTTTCACCGAGCTGACCAGCCATGTGAGC
TTCATTGTGGCGGACATTATCCTGTGCTTCAGCCTCTTGGCAGCTTTCTT
CTGGCTGAACAGTTTCGGTTTTTACATTTGGAAGACCTTTCGTTCGAGGA
ACGTCTTCCTGCGAGTCACGGACGGCAGGAAGTACTGCTATTATTCTGCG
TATGCTTGGGGATGCACAGCAACGATGGCTGCACTGGCTGTCTTCGCACA
TTTCTTCCTCGACGCCGAATCCTACAAACAGGAGCACATGGTGGGCGAGC
AAGAGACGATCGGCTGGCTAGGCATATGCATATTCTTTGCTCCAATTGCT
TGTACCATTTTGGTAAACATATTCTTCTATGTGACCACCAGGAAGTTGAT
TAACCGCAGGACGGTATACGGCCGCATTGCGCACAAATTGAAAGCCAATT
TTATCATGTTCTCGCTGATGCTGTTAGTAATGTCTATAGCCTGGCTATTC
CTCATAATGTCCTGGTTGCAGATGGAAGGCCTGCTTTACGCCCACATCGT
AGTTAACGCCCTGCAGACGCCGCTGTTGCTATACATATGCGTGCTGCGCC
AGCGACATGTGACATTTCTGCTGAAAAAGACCTGCTGCTACAATGAGCCA
CCGTCGGCAAACGACTGGGGCGATGAGCTGCATTATATGAACGGCAACGA
TTACTGAAAGCTTTCTAGACCAT
BS20524.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl5-RA | 1491 | CG6965-PA | 1..1491 | 17..1507 | 7440 | 99.9 | Plus |
| mthl5-RB | 1494 | CG6965-PB | 1..1494 | 17..1507 | 7375 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl5-RA | 1949 | CG6965-RA | 334..1824 | 17..1507 | 7440 | 99.9 | Plus |
| mthl5-RB | 1952 | CG6965-RB | 334..1827 | 17..1507 | 7375 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11884383..11884886 | 1248..745 | 2520 | 100 | Minus |
| 3R | 32079331 | 3R | 11884063..11884321 | 1507..1249 | 1295 | 100 | Minus |
| 3R | 32079331 | 3R | 11886583..11886835 | 269..17 | 1250 | 99.6 | Minus |
| 3R | 32079331 | 3R | 11884942..11885125 | 747..564 | 920 | 100 | Minus |
| 3R | 32079331 | 3R | 11885180..11885351 | 566..395 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 11885415..11885540 | 394..269 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:52:55 has no hits.
BS20524.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:24 Download gff for
BS20524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl5-RA | 331..1820 | 17..1506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:45 Download gff for
BS20524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl5-RA | 334..1823 | 17..1506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:57 Download gff for
BS20524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl5-RA | 334..1823 | 17..1506 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:57 Download gff for
BS20524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11884383..11884883 | 748..1248 | 100 | <- | Minus |
| 3R | 11884942..11885123 | 566..747 | 100 | <- | Minus |
| 3R | 11885181..11885351 | 395..565 | 100 | <- | Minus |
| 3R | 11885415..11885539 | 270..394 | 100 | <- | Minus |
| 3R | 11886583..11886835 | 17..269 | 99 | | Minus |
| 3R | 11884064..11884321 | 1249..1506 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:45 Download gff for
BS20524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7712305..7712557 | 17..269 | 99 | | Minus |
| arm_3R | 7709786..7710043 | 1249..1506 | 100 | <- | Minus |
| arm_3R | 7710105..7710605 | 748..1248 | 100 | <- | Minus |
| arm_3R | 7710664..7710845 | 566..747 | 100 | <- | Minus |
| arm_3R | 7710903..7711073 | 395..565 | 100 | <- | Minus |
| arm_3R | 7711137..7711261 | 270..394 | 100 | <- | Minus |
BS20524.pep Sequence
Translation from 16 to 1506
> BS20524.pep
MLVKTLGAHFAAGQNAKKCSCCALLISLLCVLLLSLNPLPVTSHVTSAGS
STALSSDPNLVLVNKCCEKFEIHVDHECQQVNETDYFQPMFTSYGGEQNR
PVKFKFVIGIPNCGSMQMWPIYHYAGSSDKLVLLDDGRLRHYTNAENEAE
ERHGIQSDYEEDIAGSLEPLYHDYDKGLYCIDKATSSTGEENVLFANICL
ARKEIKWSDSNFLLRKILNPIFHGISLVILLVIAIIYFILPTLRDLVGNI
VTTIAMCLMVSQAADLVRIFTELTSHVSFIVADIILCFSLLAAFFWLNSF
GFYIWKTFRSRNVFLRVTDGRKYCYYSAYAWGCTATMAALAVFAHFFLDA
ESYKQEHMVGEQETIGWLGICIFFAPIACTILVNIFFYVTTRKLINRRTV
YGRIAHKLKANFIMFSLMLLVMSIAWLFLIMSWLQMEGLLYAHIVVNALQ
TPLLLYICVLRQRHVTFLLKKTCCYNEPPSANDWGDELHYMNGNDY*
BS20524.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:53:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl5-PA | 496 | CG6965-PA | 1..496 | 1..496 | 2630 | 100 | Plus |
| mthl5-PB | 497 | CG6965-PB | 1..497 | 1..496 | 2618 | 99.8 | Plus |
| mthl2-PB | 518 | CG17795-PB | 185..487 | 175..471 | 201 | 24.5 | Plus |
| mthl15-PC | 718 | CG31720-PC | 346..622 | 171..434 | 177 | 22.1 | Plus |
| mthl10-PB | 585 | CG17061-PB | 246..532 | 216..473 | 168 | 20.8 | Plus |
