BS20529.complete Sequence
1115 bp assembled on 2011-01-11
GenBank Submission: KX806043
> BS20529.complete
GAAGTTATCAGTCGACATGCGTGTCTCCTCGCTGTTCGTTGTGTGCGTGG
CCTCCCTGGTGGCCACCACTTTGGGTCGTCCTGAGCCCCCATCCCCGTAC
TCCTACCACGGATTGCCTCAGCAGCAGAGCCAGCGGGCTTTGCCACTCAA
TGCTCACCCCGTTCCCCCGCAGATTTACCAGCCTCTGCCCCAGGAGCAGT
CGTTTGCCAACTTTGCACCGCCCCAGCAGACCTACTTGCCACCCCAAATG
CATCTGGATGCCATCGAGCAAGTGGCTCCCACTGCCGCCGCCGCTGAGCC
CCTGAATGCCTACGATGACAGCTACAACATGGCCCACCGCCTGTCCGGAG
TGCAGCATGCCAGTGGCTACAACAATGGCCCCCAGGAGACCAAGGTGCAC
AAGCACATCTACGTCCATGTGCCGCCAAAGGACTTCGAGGAGGAGGATGC
CATCCAGACCCGAGTTCACCACCAGCAGGGACCCAAGCAGAAGCACTACA
AGATCGTGTTCATCAAGGCACCATCTGCTCCGGCTATCCGTCAGCCAGTT
GTGCCACCACCACCCCAGAATGAGGAGAAGACTCTGATCTATGTGCTGCA
CAAGAAGCCCGAGCAGGAGCAAGATATCGTGATCCCGACGCCACCACCCA
CCAAGCCATCGAAGCCAGAGGTTTACTTCATCAAGTACAAGACCAAGAAG
GACGAGGCCCCCGTCTATGGACCCCCACCTGCAGAGATGGAGCCCCGTCA
GGCCACCGCCGAGGATTTCGCTCCATTGGCTGAGGTCGCCGATGTCCTGC
CACCCACCACCCTGGCTCCTGCTCCCGAGCCGGAAGTAGAGCAGCCAGCC
ATTCCCTCCGCGGTCTACGGACCACCCACTGCAGCTGCCTATACTGGTGA
GGAGGTTCAGACCACCTTGTCCGCTCCTGCCAACCAGTATCTGCCCCCTG
CCACCGCTCCCGCCGCCCTGGCCATTGAGGAGCCCTCAATGGCGCCCATC
GTGGTGGAGGAACAGCCCGAGCAGCGACTGGCTCCTTCCCATGTGCCTGC
CACCAGCTACGGTCCTCCCAACCGCTACTTCCTTAAGAAGCTGAAGTGAA
AGCTTTCTAGACCAT
BS20529.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlC-RA | 1083 | CG14254-PA | 1..1083 | 17..1099 | 5415 | 100 | Plus |
| TwdlT-RA | 861 | CG5812-PA | 553..689 | 566..702 | 370 | 84.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlC-RA | 1396 | CG14254-RA | 103..1186 | 17..1100 | 5420 | 100 | Plus |
| TwdlT-RA | 1607 | CG5812-RA | 743..879 | 566..702 | 370 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26995284..26996232 | 152..1100 | 4745 | 100 | Plus |
| 3R | 32079331 | 3R | 26994934..26995069 | 17..152 | 680 | 100 | Plus |
| 3R | 32079331 | 3R | 27050140..27050276 | 566..702 | 370 | 84.7 | Plus |
Blast to na_te.dros performed 2014-11-26 15:58:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 616..769 | 872..1031 | 120 | 56.8 | Plus |
BS20529.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:33:06 Download gff for
BS20529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlC-RA | 99..1180 | 17..1098 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:48 Download gff for
BS20529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlC-RA | 103..1184 | 17..1098 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:26 Download gff for
BS20529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlC-RA | 103..1184 | 17..1098 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:26 Download gff for
BS20529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26994934..26995069 | 17..152 | 100 | -> | Plus |
| 3R | 26995285..26996230 | 153..1098 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:48 Download gff for
BS20529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22820656..22820791 | 17..152 | 100 | -> | Plus |
| arm_3R | 22821007..22821952 | 153..1098 | 100 | | Plus |
BS20529.pep Sequence
Translation from 16 to 1098
> BS20529.pep
MRVSSLFVVCVASLVATTLGRPEPPSPYSYHGLPQQQSQRALPLNAHPVP
PQIYQPLPQEQSFANFAPPQQTYLPPQMHLDAIEQVAPTAAAAEPLNAYD
DSYNMAHRLSGVQHASGYNNGPQETKVHKHIYVHVPPKDFEEEDAIQTRV
HHQQGPKQKHYKIVFIKAPSAPAIRQPVVPPPPQNEEKTLIYVLHKKPEQ
EQDIVIPTPPPTKPSKPEVYFIKYKTKKDEAPVYGPPPAEMEPRQATAED
FAPLAEVADVLPPTTLAPAPEPEVEQPAIPSAVYGPPTAAAYTGEEVQTT
LSAPANQYLPPATAPAALAIEEPSMAPIVVEEQPEQRLAPSHVPATSYGP
PNRYFLKKLK*
BS20529.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:55:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlC-PA | 360 | CG14254-PA | 1..360 | 1..360 | 1914 | 100 | Plus |
| TwdlT-PA | 286 | CG5812-PA | 121..236 | 117..235 | 378 | 62.2 | Plus |
| TwdlE-PA | 197 | CG14534-PA | 24..196 | 95..288 | 367 | 44.2 | Plus |
| TwdlBeta-PA | 198 | CG8986-PA | 23..180 | 68..239 | 336 | 44.9 | Plus |
| TwdlG-PC | 278 | CG14643-PC | 15..250 | 32..261 | 232 | 34.8 | Plus |
