BS20530.complete Sequence
731 bp assembled on 2011-01-11
GenBank Submission: KX801036
> BS20530.complete
GAAGTTATCAGTCGACATGTTTCCTAGTCGCCAAAACCAAACTTCCTTGA
AGAACTTCGGTGACAAGACCGCCAACCTCTTCAGCAAGAAGAAGGATGAG
GCCGAGAAGCTGGCCAACGAGAAGGCTGCCGAGGCCCAGAAGCTAGCCGA
GGAGCAGGCCAAGAAGGTGGGCCAGTCCGTACAGCAGACCAAGGGCGAGG
CCGAGCAGTTGGCCGCCAGCACGGCCAAGGAAGCCGCTGCTCTAGCCACC
GCGGAGGCTCAGAAGGCTGGACAGGCGATTGACCAGGGTGTGAACCGTGC
CGCCGGAGCCGTCAACCAAGGCAAGCAGGCGGTGGACAACACGGTGGCCC
AGGCGGCGGCCGTGGCCCAGAACTCCAAGCAGGTGGCGGCCAATGTGGCG
GAGGCCTCCCAGCGAGCGGCCGCCAATGCGGTGGACCAGACCAAGAAGGC
GGCCAACGACGCCATCAACAAGAGCGTGAAGGCCGCCGAGAACGTGGCGG
ACCAGAAGCTGAAGCAGGCGGAGGGCGCCATCGATGGGGCACTGAAGCAG
ACCAGTCAAACGGTGGACCAGAAGCTGCAGGAGGCCAACCAGTATGTCGA
CCAGAAGCGCCAGTCCGTCGAGAAGACCGTCCAGGATGCGGCAGGACAGG
CCCAGGAGTCTGCCGGACAGCAGGCCAACGCCCTGTTGGGCAAGCTGCAT
CTGGGTCAGAAGTAGAAGCTTTCTAGACCAT
BS20530.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:59:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1648-RB | 699 | CG1648-PB | 1..699 | 17..715 | 3465 | 99.7 | Plus |
| CG1648-RC | 693 | CG1648-PC | 20..693 | 42..715 | 3340 | 99.7 | Plus |
| CG1648-RA | 693 | CG1648-PA | 20..693 | 42..715 | 3340 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1648-RB | 884 | CG1648-RB | 19..726 | 9..716 | 3480 | 99.4 | Plus |
| CG1648-RC | 1392 | CG1648-RC | 215..889 | 42..716 | 3345 | 99.7 | Plus |
| CG1648-RA | 1047 | CG1648-RA | 215..889 | 42..716 | 3345 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9811477..9811969 | 716..224 | 2435 | 99.6 | Minus |
| 2R | 25286936 | 2R | 9812482..9812664 | 224..42 | 915 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2933..2997 | 485..549 | 109 | 63.1 | Plus |
BS20530.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:33:07 Download gff for
BS20530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1648-RB | 33..725 | 23..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:50 Download gff for
BS20530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1648-RB | 33..725 | 23..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:28 Download gff for
BS20530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1648-RB | 33..725 | 23..715 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:28 Download gff for
BS20530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9811478..9811968 | 225..715 | 99 | <- | Minus |
| 2R | 9812482..9812664 | 42..224 | 100 | <- | Minus |
| 2R | 9812724..9812742 | 23..41 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:50 Download gff for
BS20530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5698983..5699473 | 225..715 | 99 | <- | Minus |
| arm_2R | 5699987..5700169 | 42..224 | 100 | <- | Minus |
| arm_2R | 5700229..5700247 | 23..41 | 100 | | Minus |
BS20530.pep Sequence
Translation from 16 to 714
> BS20530.pep
MFPSRQNQTSLKNFGDKTANLFSKKKDEAEKLANEKAAEAQKLAEEQAKK
VGQSVQQTKGEAEQLAASTAKEAAALATAEAQKAGQAIDQGVNRAAGAVN
QGKQAVDNTVAQAAAVAQNSKQVAANVAEASQRAAANAVDQTKKAANDAI
NKSVKAAENVADQKLKQAEGAIDGALKQTSQTVDQKLQEANQYVDQKRQS
VEKTVQDAAGQAQESAGQQANALLGKLHLGQK*
BS20530.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:55:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1648-PB | 232 | CG1648-PB | 1..232 | 1..232 | 1113 | 100 | Plus |
| CG1648-PC | 230 | CG1648-PC | 8..230 | 10..232 | 1065 | 100 | Plus |
| CG1648-PA | 230 | CG1648-PA | 8..230 | 10..232 | 1065 | 100 | Plus |
| CG45076-PH | 619 | CG45076-PH | 311..545 | 5..220 | 158 | 25.1 | Plus |
| CG45076-PA | 619 | CG45076-PA | 311..545 | 5..220 | 158 | 25.1 | Plus |
