BS20533.complete Sequence
2987 bp assembled on 2011-02-17
GenBank Submission: KX806495
> BS20533.complete
GAAGTTATCAGTCGACATGGACGAGCGGGAGAGTCTGTACTTCGACACCA
TATCGCTGGCGGAATCGGAGGCGGCGGCTGCTGCGGCGGCGCATCGCAAG
TCGATCTCGCAGTCGCGCAACACCATCTACCACTCGGCGGTCGATCTGGC
GGGCGATGAGGGAGGCGGAGGAAGCGGTGGAGGAAGGCTGCGTCTGGGCG
GCGGAGCAGCCGCCGAGCACGCAGCGCTTGCCTGGCAGCCTGGATACCGT
CAGTCCACAGCACTGGAGCACCTCAATGGCGGCGGTGGTGGTGGTGGTGA
TCACACGGATGCCGCTATCGCCGCCCAAATGATTGCCCTGCAAAACGGAC
GAAACCACCTGCCCACCGGGATCGGTGTGACCGGAGATGGAGGACAAGGA
GGTGGTGACGATGAGACATACAGACGCTTCGACGATGGCAAACGGAGCGT
GGACTTTGTGCTGGCTTACAACGGAGAGACGCAGCTGGAGGAGCATCGGC
GCAAATGCGAGATCTTTGAGGCGAATCTGCAGCGAGAGGGCTTGCAGCTG
GAGCACAACAAGGTGCAGCGCGTCCATTTCATCAAGATCCATGCGCCGGC
GGAGGTGCTGTACCGCTATGCGGAAATACTCAAGATTAAGGTGCCGCTCA
AACCGATTCCCGGCCAGGATCAAATCTTCGCCGAATCGGCGCACGAGTTC
AAGACCTGCTTCAGTCGCATGTGCAAAAGTCTCTTCAGCTCCGTCCAATT
GAATACGGCCCTGTTTCCGGAACGCGAACCGCGCATCCATCTGGAGTTCT
CCCGCAACTACCTGGAACTGTACGATACGGAGCACCCGAACTTTCTCGAC
GCCAGCACCCGCTACTCCATCATCAATTTCATTCTCCAGCGCCAGCGTTT
CGTGGAGGGCGAGGAGACGGCCGACAATCTGGGCATCGAGAAGCTCGTCC
AGGATGGCGTATATACCTGCGCCTACACCTTGCATGATAAAGACGATCGC
GATCGGCTGCTAAAGGAGTGGGCCAACATATCCAAGTGGAAGAACCTGCA
ACCACTGGACCAAATTAAAGACTACTTTGGAGCAAAGGTGGCACTCTACT
TTGCCTGGCTGGGATTCTACACGCAAATGCTGATACCCATTAGCGTGTTC
GGCGTGCTCTGTTTTCTGTACGGCTTCATCACGTGGAACAGCGATCCGAT
TAGCCGGGACATTTGCGACGACAATGGAACGATCATGTGTCCACAGTGCG
ACCGCAGCTGCGACTATTGGCGACTGAACGAGACGTGTACCTCCTCCAAG
TTCAACTATCTGATAGACAACAATATGACAGTGGTGTTTGCCTTTTCGAT
GGCCATTTGGGCAGTGGTTTACCTGGAGTTCTGGAAACGCTACTCGGCGG
GCCTGGTGCACCGCTGGGGACTGACTGGTTTTACCCACCACGTGGAGCAC
CCGCGTCCGCAATACTTGGCCAGAATATCGCGCACCAAGAAGCTGGCCGG
AAAAGCATATGAGCAGGACCACACTGGCAAGCGGACCATCTTGGATCCGG
ATGTGCCCTTCTGGAGTTTCAAGTTCCTGCCAAACTTCACCAGCTATAGC
ATTATGGTCTTGTTTATTTGCATATCAGTCATTGCCATAGCGGGCATAAT
CATCTATAGAATGGCACAGCGAGCATCGCACAGCATTTTGGGCAGCGAGA
ATTCCATGACCTTTAAGGTTATGATATTGCCCATGACGGCGGGCATCATT
GACCTTATAGTGATCTCGCTGCTGGACATGGTCTACTCGAATTTGGCTGT
AAAGCTAACCAACTACGAGTACTGTCGCACCCAGACGGAATACGATGAGA
GCCTAACTATCAAAAACTATGTGTTCCAGTTCGTCAATTATTACTCCTCG
CTCTTCTACATTGCCTTCCTCAAGGGCAAGTTCGTCGGCTATCCGGCGAA
GTACAATCGCGTGCTGGGCTTTCGCCAGGAGGAGTGCAATCCTGGCGGCT
GCCTTATGGAGCTCTGCATGCAGTTGGTAATCATTATGGCTGGCAAGCAG
GCGGTCAATGCCATCGTGGAGATGCTTATCCCCTATCTGATGCGCACCTT
CAAGGAGCTGAGCTACCGCCACGGCTGGTACAAGAGCCATCAGGACCAGC
GTCTGGTGCCGTACAACCAGTTCACCGAGGACTACAATCTACTGCCTGCC
GAGAACAACTCGCTCTACGTGGAATACCTCGAAATGGTTGTGCAATTTGG
CTTCATCACACTGTTTAGTCTGGCCTTCCCATTGGCTCCGCTGCTGGCCC
TGCTGAACAATGTGATTGAGGTGCGCCTGGACGCCATCAAAATGCTGCGC
TTCCTGCGACGGCCAGTGGGAATGCGAGCGCGCGACATTGGCGTTTGGCA
CAGCATCATGACCGTCGTCACGCGGATTGCCGTGGCCTCGAGTGCAATGA
TAATCGCATTTAGCACGAACCTCATACCAAAAATCGTGTATGCCGCCTCC
ATGGGTGATCCCGAGCTGAACAACTATCTGAACTTCACGCTGGCCGTGTT
CAACACCAAGGACTTTCAGGTGCAGCCACTGCTCGGTGGCAGTCAGCATG
TGAACGAGACGGTGTGTCGCTACACTGAGTTCCGAAACTCGCCGGAAGAT
CCGCATCCCTATAAACGTCCCATGATATATTGGAAGATACTGACGGGTCG
GCTGGCCTTCATCGTCATCTACCAGAACATTATCACCATGCTGCAGGGCA
TCCTGCGCTGGGCCGTACCGGATGTCTCGGGTCGCCTGCTGAAGCGCATC
AAGCGGGAGAACTTCCTGCTGCGGGAGCACATTATCGAGTACGAGAAACA
GCACGCCATGAAACTGGTGCAGACGGAACTCAATGGCCAACAGAAGTCGG
AAGGTGAACTGCGTCAGCGGAACAACGAAACGGTGATCCGGAATCGCGAC
GAAGCCACCTCGTTCGTGTAGAAGCTTTCTAGACCAT
BS20533.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10353-RK | 3003 | CG10353-PK | 49..3003 | 17..2971 | 14760 | 100 | Plus |
| CG10353-RI | 2955 | CG10353-PI | 1..2955 | 17..2971 | 14760 | 100 | Plus |
| CG10353-RC | 2955 | CG10353-PC | 1..2955 | 17..2971 | 14760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10353-RK | 4482 | CG10353-RK | 522..3476 | 17..2971 | 14760 | 100 | Plus |
| CG10353-RI | 4771 | CG10353-RI | 811..3765 | 17..2971 | 14760 | 100 | Plus |
| CG10353-RC | 4203 | CG10353-RC | 243..3197 | 17..2971 | 14760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:46:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11879671..11880292 | 2237..1616 | 3110 | 100 | Minus |
| X | 23542271 | X | 11881330..11881904 | 988..414 | 2860 | 99.8 | Minus |
| X | 23542271 | X | 11880356..11880926 | 1615..1045 | 2855 | 100 | Minus |
| X | 23542271 | X | 11883188..11883586 | 415..17 | 1995 | 100 | Minus |
| X | 23542271 | X | 11879050..11879331 | 2725..2444 | 1410 | 100 | Minus |
| X | 23542271 | X | 11878743..11878991 | 2971..2723 | 1245 | 100 | Minus |
| X | 23542271 | X | 11879397..11879604 | 2444..2237 | 1040 | 100 | Minus |
| X | 23542271 | X | 11881210..11881265 | 1044..989 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:46:51 has no hits.
BS20533.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:45 Download gff for
BS20533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10353-RC | 240..3194 | 17..2971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:31 Download gff for
BS20533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10353-RC | 243..3197 | 17..2971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:40 Download gff for
BS20533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10353-RC | 243..3197 | 17..2971 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:40 Download gff for
BS20533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11878743..11878988 | 2726..2971 | 100 | <- | Minus |
| X | 11879050..11879331 | 2444..2725 | 100 | <- | Minus |
| X | 11879398..11879603 | 2238..2443 | 100 | <- | Minus |
| X | 11879671..11880292 | 1616..2237 | 100 | <- | Minus |
| X | 11880356..11880926 | 1045..1615 | 100 | <- | Minus |
| X | 11881210..11881265 | 989..1044 | 100 | <- | Minus |
| X | 11881330..11881902 | 416..988 | 99 | <- | Minus |
| X | 11883188..11883586 | 17..415 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:31 Download gff for
BS20533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11772776..11773021 | 2726..2971 | 100 | <- | Minus |
| arm_X | 11773083..11773364 | 2444..2725 | 100 | <- | Minus |
| arm_X | 11773431..11773636 | 2238..2443 | 100 | <- | Minus |
| arm_X | 11773704..11774325 | 1616..2237 | 100 | <- | Minus |
| arm_X | 11774389..11774959 | 1045..1615 | 100 | <- | Minus |
| arm_X | 11775243..11775298 | 989..1044 | 100 | <- | Minus |
| arm_X | 11775363..11775935 | 416..988 | 99 | <- | Minus |
| arm_X | 11777221..11777619 | 17..415 | 100 | | Minus |
BS20533.pep Sequence
Translation from 16 to 2970
> BS20533.pep
MDERESLYFDTISLAESEAAAAAAAHRKSISQSRNTIYHSAVDLAGDEGG
GGSGGGRLRLGGGAAAEHAALAWQPGYRQSTALEHLNGGGGGGGDHTDAA
IAAQMIALQNGRNHLPTGIGVTGDGGQGGGDDETYRRFDDGKRSVDFVLA
YNGETQLEEHRRKCEIFEANLQREGLQLEHNKVQRVHFIKIHAPAEVLYR
YAEILKIKVPLKPIPGQDQIFAESAHEFKTCFSRMCKSLFSSVQLNTALF
PEREPRIHLEFSRNYLELYDTEHPNFLDASTRYSIINFILQRQRFVEGEE
TADNLGIEKLVQDGVYTCAYTLHDKDDRDRLLKEWANISKWKNLQPLDQI
KDYFGAKVALYFAWLGFYTQMLIPISVFGVLCFLYGFITWNSDPISRDIC
DDNGTIMCPQCDRSCDYWRLNETCTSSKFNYLIDNNMTVVFAFSMAIWAV
VYLEFWKRYSAGLVHRWGLTGFTHHVEHPRPQYLARISRTKKLAGKAYEQ
DHTGKRTILDPDVPFWSFKFLPNFTSYSIMVLFICISVIAIAGIIIYRMA
QRASHSILGSENSMTFKVMILPMTAGIIDLIVISLLDMVYSNLAVKLTNY
EYCRTQTEYDESLTIKNYVFQFVNYYSSLFYIAFLKGKFVGYPAKYNRVL
GFRQEECNPGGCLMELCMQLVIIMAGKQAVNAIVEMLIPYLMRTFKELSY
RHGWYKSHQDQRLVPYNQFTEDYNLLPAENNSLYVEYLEMVVQFGFITLF
SLAFPLAPLLALLNNVIEVRLDAIKMLRFLRRPVGMRARDIGVWHSIMTV
VTRIAVASSAMIIAFSTNLIPKIVYAASMGDPELNNYLNFTLAVFNTKDF
QVQPLLGGSQHVNETVCRYTEFRNSPEDPHPYKRPMIYWKILTGRLAFIV
IYQNIITMLQGILRWAVPDVSGRLLKRIKRENFLLREHIIEYEKQHAMKL
VQTELNGQQKSEGELRQRNNETVIRNRDEATSFV*
BS20533.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:16:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10353-PK | 1000 | CG10353-PK | 17..1000 | 1..984 | 5174 | 100 | Plus |
| CG10353-PI | 984 | CG10353-PI | 1..984 | 1..984 | 5174 | 100 | Plus |
| CG10353-PC | 984 | CG10353-PC | 1..984 | 1..984 | 5174 | 100 | Plus |
| CG10353-PE | 1029 | CG10353-PE | 17..1029 | 1..984 | 5134 | 97.1 | Plus |
| CG10353-PL | 1013 | CG10353-PL | 1..1013 | 1..984 | 5134 | 97.1 | Plus |
