BS20534.complete Sequence
992 bp assembled on 2011-01-11
GenBank Submission: KX800273
> BS20534.complete
GAAGTTATCAGTCGACATGACCACCGCCGCCTCCACATCGCAGCATGCGA
CATCGTCCTCCACAATGATGGCGGGCTCTGGATCCTTGGCGACCTCGTCG
TCCGCCGCTGCCCCCACAACCACGCCCAGCAGCTCGGCCGTTCGCGCCCT
GGCCATGGAGTACAAGTCGCTGCAGGAAGAGCCGGTGGAGGGATTCCGCG
TCAAGCTGATCAACGACGACAATCTGTTCGAATGGGAGGTGGCAATCTTC
GGGCCACCGGACACCCTCTACCAGGGCGGCTACTTCAAGGCGCACATGAA
GTTCCCGCACGACTATCCATACTCACCGCCATCCATACGCTTCCTGACGA
AGGTCTGGCATCCGAATGTTTACGAGAACGGTGATCTGTGCATATCCATA
CTACATCCGCCGGTGGATGATCCGCAGAGTGGCGAGCTGCCCTGCGAACG
CTGGAATCCCACGCAGAATGTGCGCACCATCCTGCTGTCGGTCATATCGC
TGCTCAATGAGCCGAACACATTCTCGCCGGCCAACGTGGACGCCTCGGTC
ATGTACCGCCGATGGCGGGACTCACAGGGTAAGGACAATGAGTATCCAAA
CATCATACGAAAACAGGCACTGGCCGCCAATGCCGAGGCCAAGCGGGAGG
GCATTGTGGTTCCGATGACCCTGGAGGACTACTGCCTGAAGCCCACGCGC
AAGCCCACAACGGAGTCTGGCCTGGATGCCAACTTCTACGATGATGATTT
CGATCTGGAGACGGAGGATGATCTGCCATCTGATGATGACTTCGATGAGG
ACGACGACGATGATGAGGACGAGGATGAAGATGAGGACAGTGCCACGGCG
CCGATTAGCAAAAATAATGGAGGCAGCAGCAAGTGCAAGAACAACGGGCT
GGTCAGAGAGGCGGCCGCCGCCGGAGCGGACGATGCCGAATCCGCTGATG
ACAGCGGCAAGGGCGAGACCACATAAAAGCTTTCTAGACCAT
BS20534.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:58:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7656-RE | 960 | CG7656-PE | 1..960 | 17..976 | 4800 | 100 | Plus |
| CG7656-RD | 960 | CG7656-PD | 1..960 | 17..976 | 4800 | 100 | Plus |
| CG7656-RF | 954 | CG7656-PF | 1..954 | 17..976 | 4675 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7656-RE | 1234 | CG7656-RE | 153..1112 | 17..976 | 4800 | 100 | Plus |
| CG7656-RD | 1410 | CG7656-RD | 303..1262 | 17..976 | 4800 | 100 | Plus |
| CG7656-RF | 2027 | CG7656-RF | 303..1256 | 17..976 | 4675 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15587004..15587565 | 578..17 | 2810 | 100 | Minus |
| 3L | 28110227 | 3L | 15586202..15586603 | 976..575 | 2010 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:58:34 has no hits.
BS20534.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:33:00 Download gff for
BS20534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7656-RE | 171..1128 | 17..974 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:38 Download gff for
BS20534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7656-RD | 303..1260 | 17..974 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:17 Download gff for
BS20534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7656-RD | 303..1260 | 17..974 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:17 Download gff for
BS20534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15586204..15586600 | 578..974 | 100 | <- | Minus |
| 3L | 15587005..15587565 | 17..577 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:38 Download gff for
BS20534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15579304..15579700 | 578..974 | 100 | <- | Minus |
| arm_3L | 15580105..15580665 | 17..577 | 100 | | Minus |
BS20534.pep Sequence
Translation from 16 to 975
> BS20534.pep
MTTAASTSQHATSSSTMMAGSGSLATSSSAAAPTTTPSSSAVRALAMEYK
SLQEEPVEGFRVKLINDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPHDY
PYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQ
NVRTILLSVISLLNEPNTFSPANVDASVMYRRWRDSQGKDNEYPNIIRKQ
ALAANAEAKREGIVVPMTLEDYCLKPTRKPTTESGLDANFYDDDFDLETE
DDLPSDDDFDEDDDDDEDEDEDEDSATAPISKNNGGSSKCKNNGLVREAA
AAGADDAESADDSGKGETT*
BS20534.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:55:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7656-PE | 319 | CG7656-PE | 1..319 | 1..319 | 1688 | 100 | Plus |
| CG7656-PD | 319 | CG7656-PD | 1..319 | 1..319 | 1688 | 100 | Plus |
| CG7656-PF | 317 | CG7656-PF | 1..317 | 1..319 | 1664 | 99.4 | Plus |
| CG7656-PA | 317 | CG7656-PA | 1..317 | 1..319 | 1664 | 99.4 | Plus |
| CG40045-PA | 168 | CG40045-PA | 10..148 | 45..186 | 433 | 54.2 | Plus |
