Clone BS20535 Report

Search the DGRC for BS20535

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:205
Well:35
Vector:pDNR-Dual
Associated Gene/Transcriptglec-RA
Protein status:BS20535.pep: full length peptide match
Sequenced Size:719

Clone Sequence Records

BS20535.complete Sequence

719 bp assembled on 2011-01-11

GenBank Submission: KX801896

> BS20535.complete
GAAGTTATCAGTCGACATGTTGTGTCCGCCAATGGCCCTGGGCCCATTTC
TCGCCGCCCCCGTGCCACGCCCACCGCCCAGCGCATCGGAGAAGAAGAGA
ATCTGTCGGAACCTATTCAATAACGCTCCCGGGGACTCGAATATCGATCA
GCTGTTGGCCCAGGAGCAGCACACGCAGAGATTATACGTTAAGGAACGCT
ACGGATATGACATCCAGCTGGAATCTAATCGGGATGCGGATGCGAATACG
GATGCGGATGCTGATACGGATGCCCATTGTCAGGTCCTGCGCGGAATGCG
GTATCCGACCTCAAGGACGATATCCAGCACCGATGCCGATGAGTGCAATC
CAAAGGCAGTCAGCCAAGCGCCGAGGGGCATGGCCCTGACTCCCGCCCAG
ATCTCCGCCAGCGCAAAGCTGATCCTTCAGAAATGCCCGGAAAGCGATCG
CAAAAAAAGCAACGGCAGTGCGGATTTGGCCAACTGCACGCGACATGGCC
AAAAGCCATATGCGAGGCAGCCACAAGGCCTCAAAGGCATGTACAATGTT
CGCAAGACCGTGAATGGTATTTCGAAACCCAACGTCAAGAATGGTTACAA
CAACAACAACAACAGCAGCAGCAGCAACAACAACAGCAACATGAATATTA
ATAATAAGATTGTGGATAATGGTACTAGCGAATTGGCAGATCAGAAGCAG
TAAAAGCTTTCTAGACCAT

BS20535.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
glec-RA 687 CG6575-PA 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
glec-RA 2050 CG6575-RA 347..1034 16..703 3440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21855399..21855920 537..16 2610 100 Minus
3R 32079331 3R 21851710..21851878 703..535 845 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:52:18 has no hits.

BS20535.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:16 Download gff for BS20535.complete
Subject Subject Range Query Range Percent Splice Strand
glec-RA 349..1028 22..701 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:41 Download gff for BS20535.complete
Subject Subject Range Query Range Percent Splice Strand
glec-RA 353..1032 22..701 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:45 Download gff for BS20535.complete
Subject Subject Range Query Range Percent Splice Strand
glec-RA 353..1032 22..701 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:45 Download gff for BS20535.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21851712..21851876 537..701 100 <- Minus
3R 21855400..21855914 22..536 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:41 Download gff for BS20535.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17677434..17677598 537..701 100 <- Minus
arm_3R 17681122..17681636 22..536 100   Minus

BS20535.pep Sequence

Translation from 16 to 702

> BS20535.pep
MLCPPMALGPFLAAPVPRPPPSASEKKRICRNLFNNAPGDSNIDQLLAQE
QHTQRLYVKERYGYDIQLESNRDADANTDADADTDAHCQVLRGMRYPTSR
TISSTDADECNPKAVSQAPRGMALTPAQISASAKLILQKCPESDRKKSNG
SADLANCTRHGQKPYARQPQGLKGMYNVRKTVNGISKPNVKNGYNNNNNS
SSSNNNSNMNINNKIVDNGTSELADQKQ*

BS20535.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
glec-PA 228 CG6575-PA 1..228 1..228 1202 100 Plus