BS20537.complete Sequence
2525 bp assembled on 2011-03-14
GenBank Submission: KX805741
> BS20537.complete
GAAGTTATCAGTCGACATGGGGCGCATTTGGTGTTTACTCTTCGTTAGCA
GTTTGCTGCACACTCAGAGCCAAAGTTTTCGCGTTCTGGCTATAAATGAG
GCCACTTGCTCGTCGGACCAATTCCGTTGCGGGAATGGCAACTGCATACC
GAACAAATGGCGCTGCGATCAGGAGAGCGATTGTGCCGATGGCTCCGATG
AAGCCAACGAATTGTGCAGAGCTCGAACCTGTTCACCGGATGAATATGCC
TGCAAGAGTGGCGAGGGGCAATGTGTTCCTTTGGCCTGGATGTGCGACCA
GAGCAAGGACTGCAGCGATGGCTCCGACGAGCACAACTGCAACCAGACCT
GTCGTGCCGACGAGTTCACCTGCGGCAATGGACGGTGCATCCAGAAGCGA
TGGAAGTGCGACCACGACGACGACTGCGGCGATGGATCCGACGAGAAGGA
GTGCCCAGTGGTGCCCTGCGACTCCGTGGCGGAGCACACCTGCACGAATG
GAGCCTGCATCGCCAAGCGGTGGGTCTGCGACGGTGATCCGGACTGCTCC
GATGGCTCCGATGAGCGGTCCTGTGCGAATGTGACCAAGACGACCACGCC
CTGCTTATCGCACGAATACCAGTGCAAGGATCGCATCACCTGCCTGCATC
ACAGCTGGCTCTGCGATGGTGACCGCGACTGTCCCGATGGCGACGATGAG
CACACAGCCAACTGCAAGAACGTCACCTGCCGGGCGGACCAGTTCCAGTG
CGGCGATCGCAGCTGCATTCCAGGACATCTCACCTGCAACGGCGACAAGG
ACTGCGCCGATGGCAGCGACGAACGGGATTGCGGATTGAGTCTGAGTCTG
GGGATCAACCAAGGAGGATGCAACGCAACCAGCGAATTCGACTGCGGTGG
AGGTCAGTGCGTTCCACTCTCGAAGGTCTGCGACAAGAGGAAGGATTGTC
CGGATGGCGAGGACGAGCCGGCAGGAAAGTGCGGGATAAACGAGTGCGCC
TCGAAGAACGGAGGCTGCATGCACCAGTGCATCGATCTGAAGGTGGGCCA
CCACTGCGAATGCCACGAGGGTTACAAGTTGTCTCCGGACAAGCGGAACT
GCCAGGATATCAATGAGTGCGAAGTTCCCGGAAAGTGCTCTCAGATATGC
GTGAACGAAATAGGAGGCTTCAAGTGTGAGTGCGAAGCGGGCTACATGAG
GGATCCCAAAAATCACACCAGATGCAAGGCCAGCGAGGGACACGCCTCCC
TGCTCCTGGCCAGACGCCATGACATCCGCAAGATAGCACTCGACCACATG
GAAATGACCTCCATTGTGAATAGTACAAAGGCAGCCACTGCCCTGGACTT
TGTGTTCCGCACGGGTATGATCTTCTGGAGCGATGTGACCACCCAGAGTA
TATATAAAGCACCGATTGATGAGGGAAACGAAAAGACGGTAGTGTTGACT
AAATCCTCGGTGACCTCGGATGGCCTGGCTGTCGATTGGATCTATAACCA
TGTCTACTTTACGGACACCCACAAGTGCACCATCGAACTGACCAACTTCG
AGGGCAGCATGGGTAAGGTCCTGGTAAAGGACTCCCTGGACATTCCTCGT
TCAATTGCTTTGGATCCCATTGAGGGCTGGATGTACTGGTCCGACTGGGG
CGCCTCTCCGCGCATCGAAAGGGCGGGTATGGATGGCTCCCACCGCACCA
CCATCATCAGCTATGACGTCAAGTGGCCCAATGGTATCACCTTAGACCTG
GTTAAGAAACGCATCTACTGGGTAGATGGCAAGCTTAACGTTATCTCGTC
GGCGAACTATGATGGCTCGCAAAGGAGCCAGGTGCTCTACTCCGGCGAAT
ACCTGCGACATCCCTTCTCGATCACCACCTTCGAGGACAATGTCTACTGG
ACCGACTGGGACAAACAGGCCGTCTTCAAGGCGAACAAGTTCACCGGGGA
GGATGTGGAGCCCGTTACAGCAATGCATATGCTCCAGCATCCAATGGTGG
TGCACGTGTACCATCCTTACCGCCAGCCGGATGGCGTGAATCACTGCCAG
TCGGTGAATGGCCACTGTTCTCATCTCTGCCTGCCAGCTCCCAGGATCAA
TGAGAGGAGTCCTCGCATATCCTGCGCCTGTCCCACCGGTCTGAAGCTGA
TGGTCGATGGCCTCATGTGCGTCGAGGATCTTGCCGACCAGCGTCCAGTG
AAAAACCATACTCAAATCGAAAAGACCACAACGCCCAGTGAGCAGCCGGA
TTCCGGCTTTATTGCACTGGTGGTCATAGCCAGTCTTAGTGGATTCGCTG
TCCTGCTATCGGTGCTCCTGCTCATTGGCTACCGCTACTGCAGCAAGCGA
CGCATCAACTCGATGAACTTCGAGAACCCCATCTACCGCAAGACCACCAC
CACAGAGGATCACTTCAGTTTGCGCAAAAATCTGCCGGCGCGGATCTACG
ACCACACCAGTGTCATGGATGAGGAGTACTCACCCGTCATAGGCATATCC
TCGTATTAGAAGCTTTCTAGACCAT
BS20537.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR1-RD | 2493 | CG31094-PD | 1..2493 | 17..2509 | 12465 | 100 | Plus |
| LpR1-RL | 2937 | CG31094-PL | 526..2937 | 98..2509 | 12060 | 100 | Plus |
| LpR1-RR | 2607 | CG31094-PR | 434..2607 | 336..2509 | 10870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:30:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR1-RD | 3369 | CG31094-RD | 245..2738 | 17..2510 | 12470 | 100 | Plus |
| LpR1-RL | 3798 | CG31094-RL | 755..3167 | 98..2510 | 12065 | 100 | Plus |
| LpR1-RR | 3286 | CG31094-RR | 481..2655 | 336..2510 | 10875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25744980..25746393 | 1981..568 | 7070 | 100 | Minus |
| 3R | 32079331 | 3R | 25706816..25707928 | 1981..869 | 3015 | 84.7 | Minus |
| 3R | 32079331 | 3R | 25747007..25747233 | 568..342 | 1135 | 100 | Minus |
| 3R | 32079331 | 3R | 25744684..25744883 | 2180..1981 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 25742154..25742316 | 2476..2314 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 25706287..25706479 | 2180..1988 | 680 | 90.2 | Minus |
| 3R | 32079331 | 3R | 25742392..25742525 | 2314..2181 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 25748103..25748225 | 341..219 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 25749269..25749390 | 219..98 | 610 | 100 | Minus |
| 3R | 32079331 | 3R | 25752061..25752142 | 98..17 | 410 | 100 | Minus |
| 3R | 32079331 | 3R | 25709411..25709513 | 448..346 | 260 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:30:24 has no hits.
BS20537.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-14 09:58:43 Download gff for
BS20537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR1-RD | 245..2737 | 17..2509 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:59 Download gff for
BS20537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR1-RD | 245..2737 | 17..2509 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:17 Download gff for
BS20537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR1-RD | 245..2737 | 17..2509 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:17 Download gff for
BS20537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25744684..25744882 | 1982..2180 | 100 | <- | Minus |
| 3R | 25741980..25742012 | 2477..2509 | 100 | <- | Minus |
| 3R | 25742154..25742315 | 2315..2476 | 100 | <- | Minus |
| 3R | 25742392..25742525 | 2181..2314 | 100 | <- | Minus |
| 3R | 25744980..25746392 | 569..1981 | 100 | <- | Minus |
| 3R | 25747007..25747233 | 342..568 | 100 | <- | Minus |
| 3R | 25748103..25748225 | 219..341 | 100 | <- | Minus |
| 3R | 25749270..25749389 | 99..218 | 100 | <- | Minus |
| 3R | 25752061..25752142 | 17..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:59 Download gff for
BS20537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21567702..21567734 | 2477..2509 | 100 | <- | Minus |
| arm_3R | 21567876..21568037 | 2315..2476 | 100 | <- | Minus |
| arm_3R | 21568114..21568247 | 2181..2314 | 100 | <- | Minus |
| arm_3R | 21570406..21570604 | 1982..2180 | 100 | <- | Minus |
| arm_3R | 21570702..21572114 | 569..1981 | 100 | <- | Minus |
| arm_3R | 21572729..21572955 | 342..568 | 100 | <- | Minus |
| arm_3R | 21573825..21573947 | 219..341 | 100 | <- | Minus |
| arm_3R | 21574992..21575111 | 99..218 | 100 | <- | Minus |
| arm_3R | 21577783..21577864 | 17..98 | 100 | | Minus |
BS20537.pep Sequence
Translation from 16 to 2508
> BS20537.pep
MGRIWCLLFVSSLLHTQSQSFRVLAINEATCSSDQFRCGNGNCIPNKWRC
DQESDCADGSDEANELCRARTCSPDEYACKSGEGQCVPLAWMCDQSKDCS
DGSDEHNCNQTCRADEFTCGNGRCIQKRWKCDHDDDCGDGSDEKECPVVP
CDSVAEHTCTNGACIAKRWVCDGDPDCSDGSDERSCANVTKTTTPCLSHE
YQCKDRITCLHHSWLCDGDRDCPDGDDEHTANCKNVTCRADQFQCGDRSC
IPGHLTCNGDKDCADGSDERDCGLSLSLGINQGGCNATSEFDCGGGQCVP
LSKVCDKRKDCPDGEDEPAGKCGINECASKNGGCMHQCIDLKVGHHCECH
EGYKLSPDKRNCQDINECEVPGKCSQICVNEIGGFKCECEAGYMRDPKNH
TRCKASEGHASLLLARRHDIRKIALDHMEMTSIVNSTKAATALDFVFRTG
MIFWSDVTTQSIYKAPIDEGNEKTVVLTKSSVTSDGLAVDWIYNHVYFTD
THKCTIELTNFEGSMGKVLVKDSLDIPRSIALDPIEGWMYWSDWGASPRI
ERAGMDGSHRTTIISYDVKWPNGITLDLVKKRIYWVDGKLNVISSANYDG
SQRSQVLYSGEYLRHPFSITTFEDNVYWTDWDKQAVFKANKFTGEDVEPV
TAMHMLQHPMVVHVYHPYRQPDGVNHCQSVNGHCSHLCLPAPRINERSPR
ISCACPTGLKLMVDGLMCVEDLADQRPVKNHTQIEKTTTPSEQPDSGFIA
LVVIASLSGFAVLLSVLLLIGYRYCSKRRINSMNFENPIYRKTTTTEDHF
SLRKNLPARIYDHTSVMDEEYSPVIGISSY*
BS20537.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:06:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR1-PD | 830 | CG31094-PD | 1..830 | 1..830 | 4646 | 100 | Plus |
| LpR1-PL | 978 | CG31094-PL | 176..978 | 28..830 | 4508 | 100 | Plus |
| LpR1-PG | 889 | CG31094-PG | 1..889 | 1..830 | 4419 | 91 | Plus |
| LpR1-PR | 868 | CG31094-PR | 68..868 | 28..830 | 4358 | 97 | Plus |
| LpR1-PQ | 976 | CG31094-PQ | 176..976 | 28..830 | 4358 | 97 | Plus |
| LpR1-PL | 978 | CG31094-PL | 136..384 | 112..365 | 434 | 37.9 | Plus |
| LpR1-PR | 868 | CG31094-PR | 28..274 | 112..365 | 434 | 37.4 | Plus |
| LpR1-PL | 978 | CG31094-PL | 136..343 | 151..371 | 335 | 34.5 | Plus |
| LpR1-PR | 868 | CG31094-PR | 19..150 | 229..378 | 185 | 30.9 | Plus |
