BS20538.complete Sequence
362 bp assembled on 2011-01-11
GenBank Submission: KX803239
> BS20538.complete
GAAGTTATCAGTCGACATGGTTTTGCTAGACAATTCGAACTTTATCCTGC
GCCTGGAGAAGATCGCAAATGCGGCCAAGAAGGACTCCTCCTTCACGCTG
ACGTTCAAGCGATATGATGGCAACGATAAGCCCGTGCCGAGGGAAGGACG
GCCACCGCTGCCCAAGCCGGAGACCTACATGTGCCTGATGCGCGCCCAGT
CCAAGTCCCAAAAAATTTCCACCGTTGTCCGGCAGGAGGATGTGCCCGCC
ATGATGAGCATGTACTCGCAGTTCATGAAGAGCAAGATGGACGGGCTAAA
GCGGGTTAAGAAAGTCAAAAGCAAGGCCAAGGCGACAAAGGGTTAAAAGC
TTTCTAGACCAT
BS20538.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:59:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp14-RB | 330 | CG5417-PB | 1..330 | 17..346 | 1650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp14-RB | 464 | CG5417-RB | 51..384 | 13..346 | 1655 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20580553..20580684 | 215..346 | 660 | 100 | Plus |
3R | 32079331 | 3R | 20580390..20580490 | 114..214 | 505 | 100 | Plus |
3R | 32079331 | 3R | 20580249..20580325 | 41..117 | 370 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:59:10 has no hits.
BS20538.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:33:10 Download gff for
BS20538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp14-RB | 46..373 | 17..344 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:53 Download gff for
BS20538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp14-RB | 55..382 | 17..344 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:31 Download gff for
BS20538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp14-RB | 55..382 | 17..344 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:31 Download gff for
BS20538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20580169..20580192 | 17..40 | 100 | -> | Plus |
3R | 20580249..20580321 | 41..113 | 100 | -> | Plus |
3R | 20580390..20580490 | 114..214 | 100 | -> | Plus |
3R | 20580553..20580682 | 215..344 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:53 Download gff for
BS20538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16405891..16405914 | 17..40 | 100 | -> | Plus |
arm_3R | 16405971..16406043 | 41..113 | 100 | -> | Plus |
arm_3R | 16406112..16406212 | 114..214 | 100 | -> | Plus |
arm_3R | 16406275..16406404 | 215..344 | 100 | | Plus |
BS20538.pep Sequence
Translation from 16 to 345
> BS20538.pep
MVLLDNSNFILRLEKIANAAKKDSSFTLTFKRYDGNDKPVPREGRPPLPK
PETYMCLMRAQSKSQKISTVVRQEDVPAMMSMYSQFMKSKMDGLKRVKKV
KSKAKATKG*
BS20538.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp14-PB | 109 | CG5417-PB | 1..109 | 1..109 | 552 | 100 | Plus |