BS20540.complete Sequence
1142 bp assembled on 2011-01-11
GenBank Submission: KX801336
> BS20540.complete
GAAGTTATCAGTCGACATGTCTGTAGCCCGTACCCCTCGATTCCGGCACC
TCCGCTGGGTGGCCTGTCTGCTGGCCAGCCTCTGGTTTTCCGTCAGCCAG
GCTCAGTTGCCAGGAACCGGATTCCAGGGACAGCGTCCGCAGGTGCCTCC
ACTGCAGCCGCTGCAACAGCAGGCCAATCCCTTTCAGCGACGCCAGCCGA
ATCCCGTACAGGGTCAAGGACTGTTTCCTGGTCAAAGGAATCCACTGAAC
CCACTGGCACCTCCACTAACTGGAGCTGCTCTACAGAATCCCTATACCCG
CTACAACCAGTACCAGCAGCAAAACTATGTGCCCATCACTGCCTACCAAA
ACGAACTCAATCTGGATGGAAGCTTCTCCTACGGATACTCGTCGGCCGAT
GGAACCACTGCCCAGGCACAGGGATACGTGAAGAACTTGGGGTATGGTGA
GGGAGTTGAGGCACAGGTGATTCAGGGATCCTACTCGTACACCTCACCGG
AGGGCACACCCATCACAGTGCGCTACATCGCCGATGAGAACGGATTTCGA
GCGGAGGGCACGGGGATTCCATCTAGCCCTCAATATTTCGCAGGTGCCCA
GCCCTATCAACAGGGCTTGCTCAATCCCAATTTGAATCCATACCAGACGC
CCTTCCGCCAGCTGCCACCCCCACTGCCCAACGCCCCCTTTCGTCCCCAG
CTTCCAGGACAACAGCCGCTCACTCCACTGCAGCAACAGCAGCAGCAACA
GCAACAACAGTTGCAACAGCAACGCGGTTTCCAGCAGCAGCAGCAGCCAA
ACTCCGGGCAATATCAACCGGAACAGCCGTTCAATCAGTTGCATTCCGGC
AACTTACCCGGTCAGTATGCCGGACAATTTGGCCAGCAATCGTTTGGCAG
CAATCTTACTGCACAACAGGCACAACAGCAGCAGAATCTCAACCAGCAAC
AGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCAGCAGAAGGAG
CAGCAAAACGAGCAGCAGCAACAGGCCCTAATCACCCAACAACTGAGGGG
CAGACCGAACAACCTGGTGGATCCATATGGCTATAATCAGTACGGCAGAC
GCTTCAAGAAGTCCCCAAAGAAATAAAAGCTTTCTAGACCAT
BS20540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:59:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Ee-RA | 1110 | CG13222-PA | 1..1110 | 17..1126 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Ee-RA | 1386 | CG13222-RA | 191..1300 | 17..1126 | 5550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11266107..11266770 | 463..1126 | 3320 | 100 | Plus |
| 2R | 25286936 | 2R | 11265316..11265768 | 17..469 | 2265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:59:19 has no hits.
BS20540.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:33:12 Download gff for
BS20540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Ee-RA | 191..1290 | 17..1116 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:56 Download gff for
BS20540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Ee-RA | 191..1290 | 17..1116 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:35 Download gff for
BS20540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Ee-RA | 191..1290 | 17..1116 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:35 Download gff for
BS20540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11265316..11265765 | 17..466 | 100 | -> | Plus |
| 2R | 11266111..11266760 | 467..1116 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:56 Download gff for
BS20540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7152821..7153270 | 17..466 | 100 | -> | Plus |
| arm_2R | 7153616..7154265 | 467..1116 | 100 | | Plus |
BS20540.pep Sequence
Translation from 16 to 1125
> BS20540.pep
MSVARTPRFRHLRWVACLLASLWFSVSQAQLPGTGFQGQRPQVPPLQPLQ
QQANPFQRRQPNPVQGQGLFPGQRNPLNPLAPPLTGAALQNPYTRYNQYQ
QQNYVPITAYQNELNLDGSFSYGYSSADGTTAQAQGYVKNLGYGEGVEAQ
VIQGSYSYTSPEGTPITVRYIADENGFRAEGTGIPSSPQYFAGAQPYQQG
LLNPNLNPYQTPFRQLPPPLPNAPFRPQLPGQQPLTPLQQQQQQQQQQLQ
QQRGFQQQQQPNSGQYQPEQPFNQLHSGNLPGQYAGQFGQQSFGSNLTAQ
QAQQQQNLNQQQQQQQQQQQQQQQQQKEQQNEQQQQALITQQLRGRPNNL
VDPYGYNQYGRRFKKSPKK*
BS20540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:55:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Ee-PA | 369 | CG13222-PA | 1..369 | 1..369 | 1975 | 100 | Plus |
| Cpr47Ea-PA | 135 | CG9079-PA | 49..130 | 113..196 | 229 | 53.6 | Plus |
| Cpr65Az-PA | 239 | CG12330-PA | 27..196 | 29..188 | 228 | 34.3 | Plus |
| CG44085-PH | 756 | CG44085-PH | 147..433 | 45..339 | 226 | 31.2 | Plus |
| Cpr49Aa-PB | 144 | CG30045-PB | 31..112 | 105..188 | 218 | 47.6 | Plus |
