BS20541.complete Sequence
749 bp assembled on 2011-01-11
GenBank Submission: KX801207
> BS20541.complete
GAAGTTATCAGTCGACATGAGTCTCAGGCAGTTTCAGAACATTTCCCGCC
AGGCCCTCAGGTGCTACTCGATGAGGCGGACCCCTGGCCCCGTCCTCGAG
CTGAGTCGCGGTCAGAGGCAGTGCCTTCGCCTCTGCACCATCATGCTTCC
CGTGAGCTGTGCGGCCACGCCCATGAACGCCATCTCCTCAGCCGCCCAGC
ACTCCACAGCAGCTGCCATCGACATGTCTGCTAACGGAGATTACAAGAAC
GCCGCCTCGATCTACGAGTTCACCGTGAAGGATACCCATGGCAACGATGT
TTCCCTGGAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATCGCCT
CCAAGTGCGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCTAAAG
GAGAAGTACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCAATCA
GTTTGGGTCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGCCACC
TGCGCGACTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGATGTG
AATGGAGACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGCAGAC
CGGCACCCTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTGGTGA
ACAAGGAGGGCGTGCCCATCAACCGATATGCCCCGACCACCGATCCCATG
GACATCGCCAAGGACATTGAAAAGCTGCTGTAGAAGCTTTCTAGACCAT
BS20541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PHGPx-RD | 717 | CG12013-PD | 1..717 | 17..733 | 3585 | 100 | Plus |
| PHGPx-RC | 597 | CG12013-PC | 82..597 | 218..733 | 2580 | 100 | Plus |
| PHGPx-RA | 510 | CG12013-PA | 1..510 | 224..733 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PHGPx-RD | 1014 | CG12013-RD | 114..831 | 17..734 | 3590 | 100 | Plus |
| PHGPx-RA | 803 | CG12013-RA | 104..620 | 218..734 | 2585 | 100 | Plus |
| PHGPx-RC | 1148 | CG12013-RC | 449..965 | 218..734 | 2585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3327860..3328185 | 218..543 | 1630 | 100 | Plus |
| 3L | 28110227 | 3L | 3327353..3327553 | 17..217 | 1005 | 100 | Plus |
| 3L | 28110227 | 3L | 3328249..3328443 | 540..734 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:56:03 has no hits.
BS20541.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:46 Download gff for
BS20541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHGPx-RD | 82..798 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:17 Download gff for
BS20541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHGPx-RD | 114..830 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:08 Download gff for
BS20541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHGPx-RD | 114..830 | 17..733 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:08 Download gff for
BS20541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3327353..3327553 | 17..217 | 100 | -> | Plus |
| 3L | 3327860..3328183 | 218..541 | 100 | -> | Plus |
| 3L | 3328251..3328442 | 542..733 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:17 Download gff for
BS20541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3327353..3327553 | 17..217 | 100 | -> | Plus |
| arm_3L | 3327860..3328183 | 218..541 | 100 | -> | Plus |
| arm_3L | 3328251..3328442 | 542..733 | 100 | | Plus |
BS20541.pep Sequence
Translation from 16 to 732
> BS20541.pep
MSLRQFQNISRQALRCYSMRRTPGPVLELSRGQRQCLRLCTIMLPVSCAA
TPMNAISSAAQHSTAAAIDMSANGDYKNAASIYEFTVKDTHGNDVSLEKY
KGKVVLVVNIASKCGLTKNNYEKLTDLKEKYGERGLVILNFPCNQFGSQM
PEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTGTLGS
GIKWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEKLL*
BS20541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PHGPx-PD | 238 | CG12013-PD | 1..238 | 1..238 | 1237 | 100 | Plus |
| PHGPx-PC | 198 | CG12013-PC | 28..198 | 68..238 | 897 | 100 | Plus |
| PHGPx-PA | 169 | CG12013-PA | 1..169 | 70..238 | 887 | 100 | Plus |
| CG15116-PA | 193 | CG15116-PA | 33..191 | 75..238 | 403 | 50.6 | Plus |
