BS20542.complete Sequence
701 bp assembled on 2011-01-11
GenBank Submission: KX804973
> BS20542.complete
GAAGTTATCAGTCGACATGGCAGGCGGCAGCAAACGCTACTCACGCAACA
ACTCCAATGGCAATTTTCAGCCGCTTCCAGAACGCGGACCAGTGGAATCC
CTTATCTACTGGCGCGATGTGAAGAAATCCGGCATTGTCTTCGGCGCTGG
CCTGATCACACTGGCGGCCATCTCCAGCTTCTCGGTGATCAGCGTGTTCG
CCTACTTGTCGCTCCTAACCCTCTTCGGCACCGTCGCCTTCAGAATCTAC
AAATCTGTGACACAGGCCGTGCAAAAGACAAACGAGGGTCACCCCTTTAA
GGATTACCTGGAGCTGGATCTGACGCTGTCGCACGAAAAGGTACAGAACA
TTGCCGGCGTGGCTGTGGCACATATCAATGGCTTCATCTCCGAGCTGAGG
CGTCTGTTTCTTGTTGAGGATATCATCGATTCGATCAAGTTCGGCGTCAT
TCTGTGGGTCTTCACCTACGTGGGTGCCTGGTTCAATGGCATGACTCTGG
TCATCTTGGCCTTTGTCTCGCTGTTTACCTTGCCCAAGGTCTACGAGAAC
AACAAGCAATCGATCGACACTCACTTGGATCTGGTGCGCAGCAAATTGAC
AGAAATCACCGACAAGATCCGAGTGGCCATCCCCATTGGCAACAAGAAGC
CCGAGGCCGCTGCCGAGTCTGAGAAGGACAAGTAAAAGCTTTCTAGACCA
T
BS20542.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rtnl1-RA | 669 | CG33113-PA | 1..669 | 17..685 | 3345 | 100 | Plus |
Rtnl1-RJ | 705 | CG33113-PJ | 111..705 | 91..685 | 2975 | 100 | Plus |
Rtnl1-RI | 705 | CG33113-PI | 111..705 | 91..685 | 2975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rtnl1-RA | 1428 | CG33113-RA | 193..862 | 17..686 | 3350 | 100 | Plus |
Rtnl1-RJ | 2311 | CG33113-RJ | 317..912 | 91..686 | 2980 | 100 | Plus |
Rtnl1-RI | 1495 | CG33113-RI | 334..929 | 91..686 | 2980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4994786..4994998 | 301..89 | 1065 | 100 | Minus |
2L | 23513712 | 2L | 4994508..4994716 | 509..301 | 1045 | 100 | Minus |
2L | 23513712 | 2L | 4994338..4994445 | 616..509 | 540 | 100 | Minus |
2L | 23513712 | 2L | 4997114..4997189 | 92..17 | 380 | 100 | Minus |
2L | 23513712 | 2L | 4994207..4994277 | 686..616 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:56:26 has no hits.
BS20542.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:47 Download gff for
BS20542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RA | 190..856 | 17..683 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:18 Download gff for
BS20542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RA | 193..859 | 17..683 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:18 Download gff for
BS20542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RA | 193..859 | 17..683 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:18 Download gff for
BS20542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4994210..4994277 | 616..683 | 100 | <- | Minus |
2L | 4994339..4994444 | 510..615 | 100 | <- | Minus |
2L | 4994508..4994716 | 301..509 | 100 | <- | Minus |
2L | 4994787..4994994 | 93..300 | 100 | <- | Minus |
2L | 4997114..4997189 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:18 Download gff for
BS20542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4994210..4994277 | 616..683 | 100 | <- | Minus |
arm_2L | 4994339..4994444 | 510..615 | 100 | <- | Minus |
arm_2L | 4994508..4994716 | 301..509 | 100 | <- | Minus |
arm_2L | 4994787..4994994 | 93..300 | 100 | <- | Minus |
arm_2L | 4997114..4997189 | 17..92 | 100 | | Minus |
BS20542.pep Sequence
Translation from 16 to 684
> BS20542.pep
MAGGSKRYSRNNSNGNFQPLPERGPVESLIYWRDVKKSGIVFGAGLITLA
AISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQAVQKTNEGHPFKDYLEL
DLTLSHEKVQNIAGVAVAHINGFISELRRLFLVEDIIDSIKFGVILWVFT
YVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDK
IRVAIPIGNKKPEAAAESEKDK*
BS20542.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rtnl1-PA | 222 | CG33113-PA | 1..222 | 1..222 | 1121 | 100 | Plus |
Rtnl1-PG | 224 | CG33113-PG | 14..224 | 13..222 | 989 | 95.3 | Plus |
Rtnl1-PD | 224 | CG33113-PD | 14..224 | 13..222 | 989 | 95.3 | Plus |
Rtnl1-PJ | 234 | CG33113-PJ | 26..234 | 14..222 | 989 | 95.7 | Plus |
Rtnl1-PL | 222 | CG33113-PL | 25..222 | 25..222 | 988 | 99.5 | Plus |