Clone BS20542 Report

Search the DGRC for BS20542

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:205
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptRtnl1-RA
Protein status:BS20542.pep: full length peptide match
Sequenced Size:701

Clone Sequence Records

BS20542.complete Sequence

701 bp assembled on 2011-01-11

GenBank Submission: KX804973

> BS20542.complete
GAAGTTATCAGTCGACATGGCAGGCGGCAGCAAACGCTACTCACGCAACA
ACTCCAATGGCAATTTTCAGCCGCTTCCAGAACGCGGACCAGTGGAATCC
CTTATCTACTGGCGCGATGTGAAGAAATCCGGCATTGTCTTCGGCGCTGG
CCTGATCACACTGGCGGCCATCTCCAGCTTCTCGGTGATCAGCGTGTTCG
CCTACTTGTCGCTCCTAACCCTCTTCGGCACCGTCGCCTTCAGAATCTAC
AAATCTGTGACACAGGCCGTGCAAAAGACAAACGAGGGTCACCCCTTTAA
GGATTACCTGGAGCTGGATCTGACGCTGTCGCACGAAAAGGTACAGAACA
TTGCCGGCGTGGCTGTGGCACATATCAATGGCTTCATCTCCGAGCTGAGG
CGTCTGTTTCTTGTTGAGGATATCATCGATTCGATCAAGTTCGGCGTCAT
TCTGTGGGTCTTCACCTACGTGGGTGCCTGGTTCAATGGCATGACTCTGG
TCATCTTGGCCTTTGTCTCGCTGTTTACCTTGCCCAAGGTCTACGAGAAC
AACAAGCAATCGATCGACACTCACTTGGATCTGGTGCGCAGCAAATTGAC
AGAAATCACCGACAAGATCCGAGTGGCCATCCCCATTGGCAACAAGAAGC
CCGAGGCCGCTGCCGAGTCTGAGAAGGACAAGTAAAAGCTTTCTAGACCA
T

BS20542.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Rtnl1-RA 669 CG33113-PA 1..669 17..685 3345 100 Plus
Rtnl1-RJ 705 CG33113-PJ 111..705 91..685 2975 100 Plus
Rtnl1-RI 705 CG33113-PI 111..705 91..685 2975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Rtnl1-RA 1428 CG33113-RA 193..862 17..686 3350 100 Plus
Rtnl1-RJ 2311 CG33113-RJ 317..912 91..686 2980 100 Plus
Rtnl1-RI 1495 CG33113-RI 334..929 91..686 2980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4994786..4994998 301..89 1065 100 Minus
2L 23513712 2L 4994508..4994716 509..301 1045 100 Minus
2L 23513712 2L 4994338..4994445 616..509 540 100 Minus
2L 23513712 2L 4997114..4997189 92..17 380 100 Minus
2L 23513712 2L 4994207..4994277 686..616 355 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:56:26 has no hits.

BS20542.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:47 Download gff for BS20542.complete
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RA 190..856 17..683 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:18 Download gff for BS20542.complete
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RA 193..859 17..683 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:18 Download gff for BS20542.complete
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RA 193..859 17..683 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:18 Download gff for BS20542.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4994210..4994277 616..683 100 <- Minus
2L 4994339..4994444 510..615 100 <- Minus
2L 4994508..4994716 301..509 100 <- Minus
2L 4994787..4994994 93..300 100 <- Minus
2L 4997114..4997189 17..92 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:18 Download gff for BS20542.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4994210..4994277 616..683 100 <- Minus
arm_2L 4994339..4994444 510..615 100 <- Minus
arm_2L 4994508..4994716 301..509 100 <- Minus
arm_2L 4994787..4994994 93..300 100 <- Minus
arm_2L 4997114..4997189 17..92 100   Minus

BS20542.pep Sequence

Translation from 16 to 684

> BS20542.pep
MAGGSKRYSRNNSNGNFQPLPERGPVESLIYWRDVKKSGIVFGAGLITLA
AISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQAVQKTNEGHPFKDYLEL
DLTLSHEKVQNIAGVAVAHINGFISELRRLFLVEDIIDSIKFGVILWVFT
YVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDK
IRVAIPIGNKKPEAAAESEKDK*

BS20542.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
Rtnl1-PA 222 CG33113-PA 1..222 1..222 1121 100 Plus
Rtnl1-PG 224 CG33113-PG 14..224 13..222 989 95.3 Plus
Rtnl1-PD 224 CG33113-PD 14..224 13..222 989 95.3 Plus
Rtnl1-PJ 234 CG33113-PJ 26..234 14..222 989 95.7 Plus
Rtnl1-PL 222 CG33113-PL 25..222 25..222 988 99.5 Plus