BS20543.complete Sequence
674 bp assembled on 2011-01-11
GenBank Submission: KX803458
> BS20543.complete
GAAGTTATCAGTCGACATGAGCGCCAAAACAATGAAAATCTCAAAAATAG
CCAAATACATCAAGAAAAGGGTGCTGTCAATGAGCACAGATGAATATCGC
AAGACCTCGCTCTTTGCCACCGGTTCCTTCGACCTGGACTTCCCCATACC
AGACCTGATCGGCAAGACAGAAATCCTTACAGAGGAGCATCGCGAGAAGC
TCTGTTCACATCTGCCGGCTAGAGCCGAGGGATACTCCTGGTCCCTGATC
TTCAGCACCTCACAACATGGTTTCGCACTGAACTCCCTGTACCGCAAAAT
GGCGCGTCTGGAGAGTCCAGTTCTGATTGTCATTGAGGATACGGAGCACA
ACGTATTTGGTGCCCTCACCTCCTGCTCACTGCATGTGTCGGATCACTTT
TACGGCACCGGTGAGTCCCTGCTCTACAAGTTTAACCCCAGCTTCAAGGT
GTTCCATTGGACTGGCGAGAATATGTACTTCATCAAAGGAAACATGGAGA
GCCTTTCGATTGGCGCTGGAGACGGTCGTTTTGGCCTGTGGCTGGATGGT
GATCTGAACCAGGGACGATCGCAACAGTGCAGCACATACGGCAATGAGCC
TCTGGCGCCACAAGAAGACTTTGTTATCAAAACACTCGAATGCTGGGCAT
TTGTTTAAAAGCTTTCTAGACCAT
BS20543.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-RI | 642 | CG32464-PI | 1..642 | 17..658 | 3210 | 100 | Plus |
| mtd-RC | 804 | CG32464-PC | 212..804 | 66..658 | 2950 | 99.8 | Plus |
| mtd-RAA | 2616 | CG32464-PAA | 2028..2616 | 70..658 | 2945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-RI | 4838 | CG32464-RI | 366..1007 | 17..658 | 3210 | 100 | Plus |
| mtd-RQ | 2394 | CG32464-RQ | 298..887 | 69..658 | 2950 | 100 | Plus |
| mtd-RC | 2303 | CG32464-RC | 711..1303 | 66..658 | 2950 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5274149..5274318 | 522..353 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 5274732..5274895 | 355..192 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 5273947..5274082 | 658..523 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 5274966..5275088 | 192..70 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 5286900..5286955 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:57:02 has no hits.
BS20543.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:49 Download gff for
BS20543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)82Fd-RI | 356..995 | 17..656 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:19 Download gff for
BS20543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RI | 366..1005 | 17..656 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:34 Download gff for
BS20543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RI | 366..1005 | 17..656 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:34 Download gff for
BS20543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5273949..5274082 | 523..656 | 100 | <- | Minus |
| 3R | 5274149..5274318 | 353..522 | 100 | <- | Minus |
| 3R | 5274735..5274894 | 193..352 | 100 | <- | Minus |
| 3R | 5274966..5275087 | 71..192 | 100 | <- | Minus |
| 3R | 5286902..5286955 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:19 Download gff for
BS20543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1099671..1099804 | 523..656 | 100 | <- | Minus |
| arm_3R | 1099871..1100040 | 353..522 | 100 | <- | Minus |
| arm_3R | 1100457..1100616 | 193..352 | 100 | <- | Minus |
| arm_3R | 1100688..1100809 | 71..192 | 100 | <- | Minus |
| arm_3R | 1112624..1112677 | 17..70 | 100 | | Minus |
BS20543.pep Sequence
Translation from 16 to 657
> BS20543.pep
MSAKTMKISKIAKYIKKRVLSMSTDEYRKTSLFATGSFDLDFPIPDLIGK
TEILTEEHREKLCSHLPARAEGYSWSLIFSTSQHGFALNSLYRKMARLES
PVLIVIEDTEHNVFGALTSCSLHVSDHFYGTGESLLYKFNPSFKVFHWTG
ENMYFIKGNMESLSIGAGDGRFGLWLDGDLNQGRSQQCSTYGNEPLAPQE
DFVIKTLECWAFV*
BS20543.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:54:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-PI | 213 | CG32464-PI | 1..213 | 1..213 | 1128 | 100 | Plus |
| mtd-PA | 210 | CG32464-PA | 12..210 | 15..213 | 1046 | 98 | Plus |
| mtd-PC | 267 | CG32464-PC | 73..267 | 19..213 | 1043 | 100 | Plus |
| mtd-PQ | 192 | CG32464-PQ | 1..192 | 22..213 | 1031 | 100 | Plus |
| mtd-PH | 192 | CG32464-PH | 1..192 | 22..213 | 1031 | 100 | Plus |
