BS20544.complete Sequence
1925 bp assembled on 2011-02-17
GenBank Submission: KX801627
> BS20544.complete
GAAGTTATCAGTCGACATGCCGAATCCGCCAATTGGATTTTATCCCCATA
TCAAAAGAAGGTGCCTACAGGTGGCGACGAATGTGACCGAGCAAAAGCAC
CATGTCACCAGGGAGACGCGCGGCAAGAATTTGGGACTCTGTCGAGGATT
CCGAGGATGCACGGTGTGGCTGACTGGCCTCAGTGGAGCTGGAAAGACCT
CGATTGCCTTCGAACTGGAGGCGTACCTGGTATCCCGGGGCATTCCGGCC
TACGGGTTGGACGGCGACAACATTCGCACCGGACTGAACAAGAACCTGGG
CTTCACGCCCGCCGATCGCGAGGAAAACATTCGCCGCGTGGGCGAGGTGG
CCAAGTTGTTTGCCGACAGCGGAGTGGTGGCCATCTGCAGCTTCGTTTCG
CCCTTCGCCGACGATCGTGAGATGGCGCGCAAGATCCACAAGGATGCGGG
TCTGAAGTTCTATGAGATATTCGTGGACACACCGCTGGATGTGTGCGAAA
CCCGGGACGTGAAGGGTCTATACAAGAAGGCGCGCGAGGGCGTAATCAAA
GGATTCACGGGCATTACGCAGGAGTACGAGCGACCCCAGATGCCGGAGCT
GGTGGTCAACACGCACGGCTACACGGTGCGCGAGTCCACTCAGAAGCTGG
TGACGCTGCTCGAACAGGAGGGCATTATTCCACGCTCGCTGCGCGACGTA
GACCTGCTGCCGGAGCTTTATCCCAGCGAATCCATTGCCACGGAGGCACT
GCGTCACGAGGCCGAGTCGCTGCAAGCCATCGAAATCAGCACCGTGGAGC
TGCAGTGGGTGCAAGTACTGGCCGAGGGATGGGCATATCCACTGCGCGGC
TTCATGCGCGAGGATGAGTACCTGCAGACGCTGCACTTCAACACACTTCA
GAGCGGCATGGACGGTTCCTATCGCGAGAACCACTCGGTGCCCATTGTTT
TGAGCGCCACGCAGGCGGACAAGGATCGTCTGGACGGCTGCTCCTCGCTG
ACTCTCAAATACCAAGGCAAGGCGGTAGCCATTCTGCGGCGTCCCGAGTT
CTACTTTCAGCGTAAGGAGGAGCGGCTGGCCCGCCAGTTCGGCACCAGCA
ATCCCAATCACCCGTACAGTAAGCAGGTCTACGAGTCCGGGGATTATTTG
GTCGGTGGCGATCTGGCAGTGATCGAACGTATCCGCTGGGAGGACGGACT
GGATCAGTACAGGCTGACTCCCAACGAGTTAAGGCGCCGCTTTAAGGAGC
TGAATGCCGACGCCATCTTCGCCTTTCAGTTGCGCAATCCCATCCACAAC
GGCCATGCCCTGCTCATGCAAGACACTCGCCGCCAGCTGCTGGAGCGCGG
CTTCAAGCAGCCAGTGCTGCTGCTGCATCCTCTGGGTGGCTGGACCAAGG
ACGACGATGTGCCGCTGGATGTGCGCATGAAGCAGCACCAGGCCGTGCTC
GACGCAGGTGTCTTGCGACGAGAGGACACAGTGCTGGCCATCTTCCCCTC
GCCAATGATGTACGCCGGTCCCACGGAGGTGCAGTGGCACGCAAAGGCGC
GCATGAACGCCGGTGCGAACTTCTACATTGTAGGCCGTGATCCGGCTGGC
ATGCCGCATCCGGCCAAGGAAACTTATCCGGATGGAAACCTATACGATGC
CACCCATGGTGCGCGAGTGCTTAAGATGGCCCAGGGACTAGACAGCATGG
AGATCCTGCCCTTCCGTGTTGCTGCCTATGACAAGAGCGCCAGTAGAATG
GCCTTCTTCGAGCCCAAGAGGAAGGATGAGTTTGAGTTCATCTCGGGAAC
CAAGATGCGCACCCTGGCCAAAACGGGAGCCAGTCCGCCGGATGGCTTCA
TGGAACCGGAGGCTTGGCGCATCCTGGCCACCTACTACCAGAACCTGCCG
CAGTCGTAAAAGCTTTCTAGACCAT
BS20544.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Papss-RH | 1893 | CG8363-PH | 1..1893 | 17..1909 | 9450 | 99.9 | Plus |
| Papss-RF | 1893 | CG8363-PF | 1..1893 | 17..1909 | 9450 | 99.9 | Plus |
| Papss-RE | 1893 | CG8363-PE | 1..1893 | 17..1909 | 9450 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Papss-RH | 2686 | CG8363-RH | 480..2372 | 17..1909 | 9450 | 99.9 | Plus |
| Papss-RF | 2729 | CG8363-RF | 523..2415 | 17..1909 | 9450 | 99.9 | Plus |
| Papss-RE | 2396 | CG8363-RE | 190..2082 | 17..1909 | 9450 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19858814..19860340 | 176..1702 | 7620 | 99.9 | Plus |
| 3L | 28110227 | 3L | 19860403..19860611 | 1701..1909 | 1045 | 100 | Plus |
| 3L | 28110227 | 3L | 19858377..19858493 | 61..177 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 19848354..19848398 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:39:24 has no hits.
BS20544.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:43 Download gff for
BS20544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RF | 519..2409 | 17..1907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:38 Download gff for
BS20544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RE | 190..2080 | 17..1907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:30 Download gff for
BS20544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RE | 190..2080 | 17..1907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:30 Download gff for
BS20544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19848354..19848398 | 17..61 | 100 | -> | Plus |
| 3L | 19858378..19858492 | 62..176 | 100 | -> | Plus |
| 3L | 19858815..19860340 | 177..1702 | 99 | -> | Plus |
| 3L | 19860405..19860609 | 1703..1907 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:38 Download gff for
BS20544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19841454..19841498 | 17..61 | 100 | -> | Plus |
| arm_3L | 19851478..19851592 | 62..176 | 100 | -> | Plus |
| arm_3L | 19851915..19853440 | 177..1702 | 99 | -> | Plus |
| arm_3L | 19853505..19853709 | 1703..1907 | 100 | | Plus |
BS20544.pep Sequence
Translation from 16 to 1908
> BS20544.pep
MPNPPIGFYPHIKRRCLQVATNVTEQKHHVTRETRGKNLGLCRGFRGCTV
WLTGLSGAGKTSIAFELEAYLVSRGIPAYGLDGDNIRTGLNKNLGFTPAD
REENIRRVGEVAKLFADSGVVAICSFVSPFADDREMARKIHKDAGLKFYE
IFVDTPLDVCETRDVKGLYKKAREGVIKGFTGITQEYERPQMPELVVNTH
GYTVRESTQKLVTLLEQEGIIPRSLRDVDLLPELYPSESIATEALRHEAE
SLQAIEISTVELQWVQVLAEGWAYPLRGFMREDEYLQTLHFNTLQSGMDG
SYRENHSVPIVLSATQADKDRLDGCSSLTLKYQGKAVAILRRPEFYFQRK
EERLARQFGTSNPNHPYSKQVYESGDYLVGGDLAVIERIRWEDGLDQYRL
TPNELRRRFKELNADAIFAFQLRNPIHNGHALLMQDTRRQLLERGFKQPV
LLLHPLGGWTKDDDVPLDVRMKQHQAVLDAGVLRREDTVLAIFPSPMMYA
GPTEVQWHAKARMNAGANFYIVGRDPAGMPHPAKETYPDGNLYDATHGAR
VLKMAQGLDSMEILPFRVAAYDKSASRMAFFEPKRKDEFEFISGTKMRTL
AKTGASPPDGFMEPEAWRILATYYQNLPQS*
BS20544.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Papss-PH | 630 | CG8363-PH | 1..630 | 1..630 | 3310 | 100 | Plus |
| Papss-PF | 630 | CG8363-PF | 1..630 | 1..630 | 3310 | 100 | Plus |
| Papss-PE | 630 | CG8363-PE | 1..630 | 1..630 | 3310 | 100 | Plus |
| Papss-PG | 629 | CG8363-PG | 12..629 | 13..630 | 3223 | 99.5 | Plus |
| Papss-PB | 629 | CG8363-PB | 12..629 | 13..630 | 3223 | 99.5 | Plus |
