BS20545.complete Sequence
1541 bp assembled on 2011-01-11
GenBank Submission: KX805532
> BS20545.complete
GAAGTTATCAGTCGACATGACAAAGAGACTGAGAATGAAGCGTGAAATGA
ACGATGAAGGGGAGGGACCACAGGACCAGAAGCGCAATCGCCGCAACGAG
GAGACCGTTCGCATACTGATTCCGAGCAGTATTGCTGGGGCTGTCATTGG
CAAAGGAGGACAGCACATTCAGAAGATGAGGACTCAGTATAAAGCCACTG
TGTCTGTCGACGATTCCCAAGGCCCCGAACGAACCATCCAAATATCGGCG
GATATAGAGTCCACATTGGAGATTATCACCGAAATGCTGAAATACTTTGA
GGAGCGCGACGAGGACTTTGATGTGCGTCTACTTATACACCAGAGCTTGG
CCGGCTGCGTCATTGGCAAAGGTGGACAAAAGATCAAGGAGATCCGCGAT
CGCATCGGCTGCCGCTTTTTGAAGGTCTTCTCGAATGTGGCACCACAGAG
CACAGATCGAGTGGTGCAGACCGTTGGCAAGCAGAGCCAGGTCATCGAAG
CGGTTCGTGAGGTGATCACACTTACACGGGACACTCCCATCAAGGGGGCG
ATACATAACTATGATCCTATGAACTTTGACCGCGTATATGCCGATGAGTA
CGGTGGCTATGGCACTGGAAGTGGCAGTACCCGTCCAAGTCAGCGGGGAA
ACAATCGTAACGGAGGAGGCGCTGGAGGTGTTGCCGGCGGCGCAGCCGGT
GGCAATGGTGGAGGATTCAATGCTGGCGGTGCACGCGGCAATGCTGGCGG
ACGTGGCGGAGCTGATCGCTTTGGCGGCGCCGCTGGTGGAGCTGTGGCCG
GTGCTGGAATGGGGCAGCGCGACAATCCGTTCATTAATCCGTGGGCCAAT
GGCGGTGGCGGTGATGTAGATGGTTTTGGCAACAACGCTGGTGGTGCTGG
TGGATTTGCCGGTAACAGCTTTGGCGGTGGCGCCGGTGGACCATTCGGAG
GTGGTAGCTTTGGCAACAACGGTTTCGGAGGTGGACCCAGCGACTTTGGC
GGAAATTCCGGAAACTTTGGACAGGCCCAGGGCACTAACAGTCTGCCAAG
CCTTGGTAGCTTCAGCCAGAACCAGGGTGGCACTAGCAGCCTGCCCAGCT
TGGGCAGCTTTGGTCAGAATCCAGGCGGACCCGGTGGATTGGGTAACGGA
CTGAGTGGCGGTGCTAATGGCGGCGTTGGAACCCTGGGTGGTGCTAATGG
AGCCGGTGGCTTTAATGCTGTCGGTGGAGCTAACGGTGGGCCGAATGGCA
GCCCAAATGCCGCGACAAATGTGCCTCAGGGTCATGATCCCAACAACAGC
ACACAGGTCACCATTCCAAAAGAGCTGGCTGGTGCCATCATTGGTAAGGG
AGGTGGCCGCATCCGTCGCATCCGCAACGAGTCCAGTGCGTACATCACCA
TCGACGAGCCCCTGCCAAACTCGAACGATCGTATCATCACCATCTCGGGC
ACGCCGAAGCAAATACAAATGGCCCAGTATCTGCTGCAACAGAGCGTACA
CGAGAATGGCAGGCGAAACATTTAAAAGCTTTCTAGACCAT
BS20545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bl-RC | 1509 | CG13425-PC | 1..1509 | 17..1525 | 7545 | 100 | Plus |
| bl-RF | 1491 | CG13425-PF | 1..1491 | 35..1525 | 7455 | 100 | Plus |
| bl-RA | 1491 | CG13425-PA | 1..1491 | 35..1525 | 7455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bl-RC | 2127 | CG13425-RC | 237..1747 | 15..1525 | 7555 | 100 | Plus |
| bl-RF | 2078 | CG13425-RF | 197..1698 | 24..1525 | 7510 | 100 | Plus |
| bl-RA | 2076 | CG13425-RA | 195..1696 | 24..1525 | 7510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20604696..20605623 | 401..1328 | 4625 | 99.9 | Plus |
| 2R | 25286936 | 2R | 20605680..20605851 | 1323..1494 | 860 | 100 | Plus |
| 2R | 25286936 | 2R | 20595557..20595663 | 24..130 | 535 | 100 | Plus |
| 2R | 25286936 | 2R | 20598597..20598694 | 303..400 | 490 | 100 | Plus |
| 2R | 25286936 | 2R | 20598452..20598525 | 231..304 | 370 | 100 | Plus |
| 2R | 25286936 | 2R | 20595758..20595814 | 131..187 | 285 | 100 | Plus |
| 2R | 25286936 | 2R | 20597545..20597591 | 185..231 | 235 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3655..3701 | 1145..1099 | 127 | 74.5 | Minus |
BS20545.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:50 Download gff for
BS20545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bl-RC | 285..1791 | 17..1523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:21 Download gff for
BS20545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bl-RC | 239..1745 | 17..1523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:41 Download gff for
BS20545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bl-RC | 239..1745 | 17..1523 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:41 Download gff for
BS20545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20595550..20595663 | 17..130 | 97 | -> | Plus |
| 2R | 20595758..20595814 | 131..187 | 100 | -> | Plus |
| 2R | 20597548..20597591 | 188..231 | 100 | -> | Plus |
| 2R | 20598453..20598525 | 232..304 | 100 | -> | Plus |
| 2R | 20598599..20598694 | 305..400 | 100 | -> | Plus |
| 2R | 20604696..20605619 | 401..1324 | 100 | -> | Plus |
| 2R | 20605682..20605851 | 1325..1494 | 100 | -> | Plus |
| 2R | 20606444..20606472 | 1495..1523 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:21 Download gff for
BS20545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16493187..16493356 | 1325..1494 | 100 | -> | Plus |
| arm_2R | 16493949..16493977 | 1495..1523 | 100 | | Plus |
| arm_2R | 16483055..16483168 | 17..130 | 97 | -> | Plus |
| arm_2R | 16483263..16483319 | 131..187 | 100 | -> | Plus |
| arm_2R | 16485053..16485096 | 188..231 | 100 | -> | Plus |
| arm_2R | 16485958..16486030 | 232..304 | 100 | -> | Plus |
| arm_2R | 16486104..16486199 | 305..400 | 100 | -> | Plus |
| arm_2R | 16492201..16493124 | 401..1324 | 100 | -> | Plus |
BS20545.pep Sequence
Translation from 16 to 1524
> BS20545.pep
MTKRLRMKREMNDEGEGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQH
IQKMRTQYKATVSVDDSQGPERTIQISADIESTLEIITEMLKYFEERDED
FDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAPQSTDRVV
QTVGKQSQVIEAVREVITLTRDTPIKGAIHNYDPMNFDRVYADEYGGYGT
GSGSTRPSQRGNNRNGGGAGGVAGGAAGGNGGGFNAGGARGNAGGRGGAD
RFGGAAGGAVAGAGMGQRDNPFINPWANGGGGDVDGFGNNAGGAGGFAGN
SFGGGAGGPFGGGSFGNNGFGGGPSDFGGNSGNFGQAQGTNSLPSLGSFS
QNQGGTSSLPSLGSFGQNPGGPGGLGNGLSGGANGGVGTLGGANGAGGFN
AVGGANGGPNGSPNAATNVPQGHDPNNSTQVTIPKELAGAIIGKGGGRIR
RIRNESSAYITIDEPLPNSNDRIITISGTPKQIQMAQYLLQQSVHENGRR
NI*
BS20545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:54:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bl-PC | 502 | CG13425-PC | 1..502 | 1..502 | 2644 | 100 | Plus |
| bl-PF | 496 | CG13425-PF | 1..496 | 7..502 | 2615 | 100 | Plus |
| bl-PA | 496 | CG13425-PA | 1..496 | 7..502 | 2615 | 100 | Plus |
| bl-PE | 493 | CG13425-PE | 1..486 | 7..492 | 2562 | 100 | Plus |
| bl-PB | 413 | CG13425-PB | 1..413 | 90..502 | 2200 | 100 | Plus |
