BS20546.complete Sequence
1319 bp assembled on 2011-01-11
GenBank Submission: KX802340
> BS20546.complete
GAAGTTATCAGTCGACATGGACATGGATACCTTGCTACCTTCACCACCCG
CAACGCCCCCACTAAGGGAAAACAAGTTGGAAATCGTCGCCAAGGACGAA
CAACAGGTGAACGAGAATCTGCTAAAGGCAAAGCTCAAGCTGGTGGCCCA
AAAGAGTCAGAAAAATGGAGGGATTATTACACCAAATCCATCGGACACGG
AAGACGAGGCTCCCGAAATAGCGGTTCCCAACAAGAAACCCCGTTTGGAA
CAACCTGCTATGAGCATGACACCGCCGCCGGATCAAAAGCTGGACGATGA
TCAGAAAGCGGAAAGGGTTAGCGTCATCATGCGGGTCAACAGTTCTGGCG
CTGTCTCTTCTAGTAGCCAAGACGAGAACTCATCTAGTTCCACCTCCTGC
TGTAGTTCCTCTTCCAACACAAACACAAGTACAAGTTCAGTACCACCCAC
TGTGGAGGACGACTATCCAGAGGCCAATGTGTGGCGCAATCTCAAGTTCA
AAATGAACAGAAAGCGTGCTGCAGAAGTGGCACTACCCCCAGTACAAACA
CCCGAGACACCAGTTGCGAAGCTTGTAACGCCACCTGCTCCAGCGGAATG
CATCAAGGAGGAGGAAATAAAACCTATTCTGACACCGATATATGTTAGCC
CAGTAGCTTCGTCTGCCAGCCAACTTATCCTGCTCAGCACAGTGGCCGCC
CAACAGAGCCCCACACCCGTACCCAAAACGCCAACAATGTCCGAGGAGAA
ACTAACAACCAGAATTACGGCCGCCCAGGCGGCGGCCACCAGAAGTCGCA
TCTACGAGTGCAGTTTTCCCGATTGCGGCAAGAATTACTTCAAAAGCAGT
CATCTGAAGGCCCACCAGAGGGTTCACACCGGCGAGCGACCCTTTATCTG
CAAGTGGGAGAACTGTGACAAACGATTCTCCCGTTCCGATGAGTTGTCCC
GACACAAACGGACCCACACCGGTGAAAAGAAATTCCAGTGCAGCGTCTGC
CAGAAGAAATTCATGAGAAGCGATCACCTGTCGAAGCACGTCAAACGGCA
CAACAAGGACAAGGCGAACGGAGTGAATCGACATGTCTCCCTGGCCAACA
ACAACACATCAGCTTCGGTAGCGGCTTCCCTCTGCGATGCCTCGCTCCAT
TTGCGAGCGATAGCACCGGCGGGCTCCAGCGCTAGTTCCTCGCCCATCAG
TTCCGCCAGCTTGCAAGTCTACAGCGCCCAAGATCTGCTGAGGCTACAGC
AGCAGGCCAGCAGTTTCACCTTCGGCGGAACCCTGCTTCAAGTGCAGCGA
TGAAAGCTTTCTAGACCAT
BS20546.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbt-RA | 1287 | CG4427-PA | 1..1287 | 17..1303 | 6435 | 100 | Plus |
| cbt-RC | 1044 | CG4427-PC | 1..1044 | 260..1303 | 5220 | 100 | Plus |
| cbt-RB | 1044 | CG4427-PB | 1..1044 | 260..1303 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbt-RA | 2041 | CG4427-RA | 214..1500 | 17..1303 | 6435 | 100 | Plus |
| cbt-RC | 2361 | CG4427-RC | 603..1820 | 86..1303 | 6090 | 100 | Plus |
| cbt-RB | 3243 | CG4427-RB | 1485..2702 | 86..1303 | 6090 | 100 | Plus |
| cbt-RC | 2361 | CG4427-RC | 214..284 | 17..87 | 355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 476987..478204 | 1303..86 | 6090 | 100 | Minus |
| 2L | 23513712 | 2L | 479405..479475 | 87..17 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:57:25 has no hits.
BS20546.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:52 Download gff for
BS20546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbt-RA | 208..1493 | 17..1302 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:23 Download gff for
BS20546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbt-RA | 214..1499 | 17..1302 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:46 Download gff for
BS20546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbt-RA | 214..1499 | 17..1302 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:46 Download gff for
BS20546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 476988..478204 | 86..1302 | 100 | <- | Minus |
| 2L | 479407..479475 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:23 Download gff for
BS20546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 476988..478204 | 86..1302 | 100 | <- | Minus |
| arm_2L | 479407..479475 | 17..85 | 100 | | Minus |
BS20546.pep Sequence
Translation from 16 to 1302
> BS20546.pep
MDMDTLLPSPPATPPLRENKLEIVAKDEQQVNENLLKAKLKLVAQKSQKN
GGIITPNPSDTEDEAPEIAVPNKKPRLEQPAMSMTPPPDQKLDDDQKAER
VSVIMRVNSSGAVSSSSQDENSSSSTSCCSSSSNTNTSTSSVPPTVEDDY
PEANVWRNLKFKMNRKRAAEVALPPVQTPETPVAKLVTPPAPAECIKEEE
IKPILTPIYVSPVASSASQLILLSTVAAQQSPTPVPKTPTMSEEKLTTRI
TAAQAAATRSRIYECSFPDCGKNYFKSSHLKAHQRVHTGERPFICKWENC
DKRFSRSDELSRHKRTHTGEKKFQCSVCQKKFMRSDHLSKHVKRHNKDKA
NGVNRHVSLANNNTSASVAASLCDASLHLRAIAPAGSSASSSPISSASLQ
VYSAQDLLRLQQQASSFTFGGTLLQVQR*
BS20546.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:54:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbt-PA | 428 | CG4427-PA | 1..428 | 1..428 | 2193 | 100 | Plus |
| cbt-PC | 347 | CG4427-PC | 1..347 | 82..428 | 1780 | 100 | Plus |
| cbt-PB | 347 | CG4427-PB | 1..347 | 82..428 | 1780 | 100 | Plus |
| Spps-PA | 968 | CG5669-PA | 606..874 | 170..397 | 364 | 30.9 | Plus |
| Sp1-PB | 520 | CG1343-PB | 127..298 | 215..371 | 359 | 44.8 | Plus |
